Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0684 ATGGAGAAAAAGGGTACCATTTTAATGCAAAGATACGAGCTTGGGAGAATGCTTGGACAAGGCACTTTTGCTAAAGTCTACCATGCTCGTAATCTCAACTCTGGCCAGAGCGTGGCCATTAAAATCATTGACAAAGAGAAAGTGTTACGTGTTGGGTTGATCGACCAAATCAAGAGGGAAATCTCTGTTATGCGCCTTGTCCGACATCCCAATGTGGTGCAGCTTTATGAGGTTATGGCTAGCAGGACCAAAATCTATTTTGCTATGGAGTATGTTAAAGGAGGGGAGCTTTTTAATAAAGTGGCTAAAGGGAAGCTTAAAGAAGATGCTGCTCGTAAGTACTTTCAACAGCTAATTGGTGCTGTTGATTATTGTCATAGCCGTGGTGTGTACCATAGAGATATCAAGCCTGAAAATCTCCTTCTTGATGAGTTTGGGAATCTCAAGATTTCTGATTTTGGATTAAGTGCTTTGGCCGAGTCTAGAAGACAAGATGGGCTTCTTCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTTCTGTTTGTTCTTCTGGCTGGTTATCTCCCTTTCCATGATCCAAATCTAATGGAAATGTACAGAAAAATCTCAAGAGGAGAATTCAGATGCCCTCATTGGTTTCCCCCAGAAGTTCGAAAACTACTCTCAAGAATCCTTGACCCATATCCTCACACTAGAATAAACATGGCCAAACTCATGGAAAATTCCTGGTTCAAGAAGGGTTTCAAAACAAATGTAGCAACTCCAAAACAACTTCAAATCAATGGAGATGTGTCGTATGTGAGCGATGTTCATTCTGCTTTCGACGACATTAGTTGGGATAAAGGAAGCTCTGTTAGTAACACCAGTGATAGTGGAAAGCCACCAACAGCTAAAGCCCCAATGAGACATAATTCTTTCAATGCATTTGACATCATATCTCTCTCACCAGGTTTTGATCTCTCAGGTTTGTTTGAGAGTGATGCGAATGAGAGGCCACAGTCTCGTTTCACGACCACGAAACCTGCATCTGCGATCGTGTCGAAGTTTGAGGAAATAGCAGAAATGGAAAGGTTCAAAGTGATGAAGAAAGATGGGATTGTTAAACTGCAGGGGAGTAAACAGGGGAGGAAAGGACAATTGGCTATAGATGCTGAAATATTTGAAGTAACACCTTCATTTTTTGTGGTGGAAGTGAAGAAAACTGCTGGAGACACATTGGAATATAGGCAATTTTACAACAAAGACATGAGACCTTGTCTTAAGGATATTGTATGGACTTGGGAAGGAAATGAGCAGCAGCAGCAGCAGCAGCAACAACAACCACAATCACAAATTGTTTAG 1407 41.51 MEKKGTILMQRYELGRMLGQGTFAKVYHARNLNSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFNKVAKGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFRCPHWFPPEVRKLLSRILDPYPHTRINMAKLMENSWFKKGFKTNVATPKQLQINGDVSYVSDVHSAFDDISWDKGSSVSNTSDSGKPPTAKAPMRHNSFNAFDIISLSPGFDLSGLFESDANERPQSRFTTTKPASAIVSKFEEIAEMERFKVMKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYNKDMRPCLKDIVWTWEGNEQQQQQQQQQPQSQIV 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7068521 7070043 + CcPI632755_03g006840.1 Cco03g0684 174043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0684 468 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0684 468 FunFam Non-specific serine/threonine protein kinase 2 290 - -
Cco03g0684 468 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0684 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0684 468 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0684 468 SUPERFAMILY Protein kinase-like (PK-like) 8 316 IPR011009 -
Cco03g0684 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 440 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco03g0684 468 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cco03g0684 468 FunFam Non-specific serine/threonine protein kinase 323 447 - -
Cco03g0684 468 Gene3D Kinase associated domain 1, KA1 323 448 - -
Cco03g0684 468 Pfam NAF domain 326 384 IPR004041 GO:0007165(InterPro)
Cco03g0684 468 Gene3D Transferase(Phosphotransferase) domain 1 3 312 - -
Cco03g0684 468 CDD CIPK_C 329 443 - -
Cco03g0684 468 CDD STKc_SnRK3 11 265 - -
Cco03g0684 468 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cco03g0684 468 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0684 Cco-Chr3:7068521 Cco04g0826 Cco-Chr4:23749442 2.60E-172 dispersed
Cco02g1914 Cco-Chr2:32026298 Cco03g0684 Cco-Chr3:7068521 6.50E-21 wgd
Cco03g0684 Cco-Chr3:7068521 Cco04g2163 Cco-Chr4:35364142 1.70E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86663 PF00069 Pkinase 1.00E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0684 K07198 - csv:101206082 839.336