Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0696 ATGGGTCCAGATCGAAAGAAGAAGATTCGAACTCCAGTGAGAAGCGCACTTCAATTTGAAGATTCACAGACTCTGGAGTTGCTTGCCTTTGTGTGGGGTTGCTTTTCCAGTTTCTCCTGTAGCGGTTTGGTTGGTGCACAATCGTCTGTTAGTAGTTCAAATCAAAGACGTGCTCGCCCTAACCAAATCTTTGCTTACACTTCCCGCAAAATTCAAATCTGTTTCTACACACACTTTGCTTCTCATCTCTTCTTCCTCTCCTCTGCAGATGGAATCAGGTGTCCGAAGAAAGGGCAAGTGAGAAACAGGATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAACCAGTCGGGGTTGATGGCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAGAGTTTGCGTTCAGTATGATATTAAGGAAGGTCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACAATGGAATCACATCTCAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCCGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTACTGTGAAGACTGAACAGGAAGCTCAAATACCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGACTGCAGTTACACACTCATTTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATTGTGATAATCATGCGATTGATCATTCTAGCCCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGAGACACATTCATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAACTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCTGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAGTTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCCTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCGAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACGTAGAGGGTAATGAACTTCCTCGACTGGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCCCTGGTGAGAGTATCAGCAGTCCTCACAAACGCCCCATTCATTCTCAACCTTGACTGTGATCATTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATACGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCGGTTTACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTATGGACCTCCTACTCTGCCTAGCTTATCTAAGACGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGATCTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAATCTAAGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCCTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATTAAAGAAGCCATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCGTGAGGCCAGCATTCAAAGGATCAGCACCGATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTGTGGTATGGATTCGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTCATTGCCTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACCCTGTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTCGAGCTCCGTTGGAGCGGTGTTAGCATTGAAGATATATGGCGTAATGAGCAATTTTGGGTCATAGGAGGTGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTTCTAAAGATGTTGGCTGGCATCGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACGCTGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTCATTGTCGTTAACATGGTCGGTGTTGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATCAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA 3264 44.24 MGPDRKKKIRTPVRSALQFEDSQTLELLAFVWGCFSSFSCSGLVGAQSSVSSSNQRRARPNQIFAYTSRKIQICFYTHFASHLFFLSSADGIRCPKKGQVRNRMMVSDVPICHTCGEPVGVDGNGEVFVACHECHFPICRVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMESHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPQQQMEEKQISEETAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTTSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7150025 7156561 - CcPI632755_03g006960.1 Cco03g0696 174055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0696 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 185 IPR013083 -
Cco03g0696 1087 MobiDBLite consensus disorder prediction 172 191 - -
Cco03g0696 1087 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 656 685 IPR017896 -
Cco03g0696 1087 FunFam Cellulose synthase 475 649 - -
Cco03g0696 1087 Pfam Zinc-binding RING-finger 110 162 IPR027934 -
Cco03g0696 1087 SUPERFAMILY Nucleotide-diphospho-sugar transferases 372 885 IPR029044 -
Cco03g0696 1087 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 508 650 IPR029044 -
Cco03g0696 1087 Pfam Cellulose synthase 358 1077 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cco03g0696 1087 SUPERFAMILY RING/U-box 100 178 - -
Cco03g0696 1087 MobiDBLite consensus disorder prediction 222 250 - -
Cco03g0696 1087 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 278 1054 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0696 Cco-Chr3:7150025 Cco06g0146 Cco-Chr6:1492988 0.00E+00 dispersed
Cco03g0696 Cco-Chr3:7150025 Cco10g1101 Cco-Chr10:23307788 5.40E-229 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0696 K10999 - csv:101208988 1959.5