Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0703 | ATGGATGATAATGTTACCTTCAACAATAATAACCACCAATTCTTTTCGGCTGATCAACTTGAAGATTCCGACGAATCAAAACCCGCCCCTGATTCTCCTCCTCCTAATTCCGCCGCCGCCGCCACCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTCTTTCGGTGAAAATTAATGGCGACAACCCAAGAAATTCCTCTGGTTCTACAACTCCACCTTCTGATGCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCCAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACTATGTTGCTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCAGTTTCTAGGAACAACAATTCCAACCACAACCAAACCGCTGCGGTGAAACCCGATTCACCGGAGACGGTTCCGGTTGAGGTAGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACAGGAGATGAGTTTAGTTGGTTTGGAGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCGGGGAGAGCATCCAGTGGATTGGTGGATCATTCAATTTCAAGTGACGTGGCAATGCTTTTGCCCATGGGGGATGATGACATGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAATGTTCTCTTGTGTTCCGGCGTGGCGGAGGTCGGGGATTACCGGTGGATGAACAACCGGCTGCAGCCCAGCGGCGGATCACACCGTGGTGTGGAACCACCACATGA | 831 | 49.34 | MDDNVTFNNNNHQFFSADQLEDSDESKPAPDSPPPNSAAAATATKKGRRGMKKKVLSVKINGDNPRNSSGSTTPPSDAWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNSNHNQTAAVKPDSPETVPVEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSISSDVAMLLPMGDDDMDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7237583 | 7238579 | + | CcPI632755_03g007030.1 | Cco03g0703 | 174062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0703 | 276 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 25 | 244 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Cco03g0703 | 276 | FunFam | WRKY transcription factor 65 | 59 | 136 | - | - | |
Cco03g0703 | 276 | MobiDBLite | consensus disorder prediction | 61 | 76 | - | - | |
Cco03g0703 | 276 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cco03g0703 | 276 | Pfam | WRKY DNA -binding domain | 77 | 133 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco03g0703 | 276 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cco03g0703 | 276 | Gene3D | WRKY domain | 63 | 137 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco03g0703 | 276 | SMART | WRKY_cls | 75 | 135 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco03g0703 | 276 | SUPERFAMILY | WRKY DNA-binding domain | 72 | 135 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco03g0703 | 276 | ProSiteProfiles | WRKY domain profile. | 76 | 136 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco03g0703 | 276 | MobiDBLite | consensus disorder prediction | 136 | 153 | - | - | |
Cco03g0703 | 276 | MobiDBLite | consensus disorder prediction | 136 | 160 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0703 | Cco-Chr3:7237583 | Cco03g0867 | Cco-Chr3:10274534 | 1.90E-29 | dispersed | |
Cco03g0703 | Cco-Chr3:7237583 | Cco07g0258 | Cco-Chr7:2622652 | 3.60E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58928 | PF03106 | WRKY | 6.90E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0703 | - | - | - | 0.0 |