Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0703 ATGGATGATAATGTTACCTTCAACAATAATAACCACCAATTCTTTTCGGCTGATCAACTTGAAGATTCCGACGAATCAAAACCCGCCCCTGATTCTCCTCCTCCTAATTCCGCCGCCGCCGCCACCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTCTTTCGGTGAAAATTAATGGCGACAACCCAAGAAATTCCTCTGGTTCTACAACTCCACCTTCTGATGCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCCAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACTATGTTGCTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCAGTTTCTAGGAACAACAATTCCAACCACAACCAAACCGCTGCGGTGAAACCCGATTCACCGGAGACGGTTCCGGTTGAGGTAGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACAGGAGATGAGTTTAGTTGGTTTGGAGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCGGGGAGAGCATCCAGTGGATTGGTGGATCATTCAATTTCAAGTGACGTGGCAATGCTTTTGCCCATGGGGGATGATGACATGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAATGTTCTCTTGTGTTCCGGCGTGGCGGAGGTCGGGGATTACCGGTGGATGAACAACCGGCTGCAGCCCAGCGGCGGATCACACCGTGGTGTGGAACCACCACATGA 831 49.34 MDDNVTFNNNNHQFFSADQLEDSDESKPAPDSPPPNSAAAATATKKGRRGMKKKVLSVKINGDNPRNSSGSTTPPSDAWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNSNHNQTAAVKPDSPETVPVEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSISSDVAMLLPMGDDDMDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7237583 7238579 + CcPI632755_03g007030.1 Cco03g0703 174062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0703 276 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 25 244 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cco03g0703 276 FunFam WRKY transcription factor 65 59 136 - -
Cco03g0703 276 MobiDBLite consensus disorder prediction 61 76 - -
Cco03g0703 276 MobiDBLite consensus disorder prediction 1 79 - -
Cco03g0703 276 Pfam WRKY DNA -binding domain 77 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0703 276 MobiDBLite consensus disorder prediction 1 17 - -
Cco03g0703 276 Gene3D WRKY domain 63 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0703 276 SMART WRKY_cls 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0703 276 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0703 276 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0703 276 MobiDBLite consensus disorder prediction 136 153 - -
Cco03g0703 276 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0703 Cco-Chr3:7237583 Cco03g0867 Cco-Chr3:10274534 1.90E-29 dispersed
Cco03g0703 Cco-Chr3:7237583 Cco07g0258 Cco-Chr7:2622652 3.60E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58928 PF03106 WRKY 6.90E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0703 - - - 0.0