Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0707 | ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGACGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAATTCTTCTTCTTCCAGCGGAGGAATTCGCGCTCTCTGATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATGTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTCGTTTCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGGGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGCGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAGAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACCGTCCCAAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGTTCGATTATTAGATGGATGGAAGAAGGGCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTTCCAACCGTGCATTAAGGAATTTGATTGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAAATATGGATGCATCCGCAGAGAGTTATGCAATGGCTTCTCCCACACGAGCAGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCGTTGGATCGCAGGATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCCAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTCTGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACGGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTATGGCGGATTGGGGGTGGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGTGAGGTATCTGTGCCGATATCCATCTCGGTACCGGTCGTATAA | 2148 | 46.51 | MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLTIVATELVSRFSEKFFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDERDEALRTRFLSFLDEFENGRLPNPGEMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSIIRWMEEGHNTCPKTGQMLIHTRLASNRALRNLIVQWCIAHGVPYDPPENMDASAESYAMASPTRAALEANRATAMILIQQLSVGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLEFCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISVPVV | 715 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7294835 | 7296982 | + | CcPI632755_03g007070.1 | Cco03g0707 | 174066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0707 | 715 | Pfam | U-box domain | 288 | 358 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco03g0707 | 715 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 432 | 474 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0707 | 715 | Pfam | Armadillo/beta-catenin-like repeat | 422 | 460 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0707 | 715 | SUPERFAMILY | ARM repeat | 394 | 669 | IPR016024 | - | |
Cco03g0707 | 715 | PANTHER | U BOX DOMAIN-CONTAINING | 55 | 672 | - | - | |
Cco03g0707 | 715 | FunFam | RING-type E3 ubiquitin transferase | 287 | 362 | - | - | |
Cco03g0707 | 715 | CDD | RING-Ubox_PUB | 289 | 341 | IPR045210 | - | |
Cco03g0707 | 715 | SMART | Ubox_2 | 291 | 354 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco03g0707 | 715 | ProSiteProfiles | U-box domain profile. | 287 | 361 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco03g0707 | 715 | SMART | arm_5 | 547 | 585 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0707 | 715 | SMART | arm_5 | 506 | 546 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0707 | 715 | SMART | arm_5 | 463 | 504 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0707 | 715 | SMART | arm_5 | 421 | 461 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0707 | 715 | FunFam | RING-type E3 ubiquitin transferase | 364 | 685 | - | - | |
Cco03g0707 | 715 | Coils | Coil | 212 | 232 | - | - | |
Cco03g0707 | 715 | SUPERFAMILY | RING/U-box | 277 | 362 | - | - | |
Cco03g0707 | 715 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 362 | IPR013083 | - | |
Cco03g0707 | 715 | Gene3D | - | 392 | 667 | IPR011989 | - | |
Cco03g0707 | 715 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 517 | 559 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0707 | Cco-Chr3:7294835 | Cco04g0823 | Cco-Chr4:23607535 | 3.30E-102 | dispersed | |
Cco03g0707 | Cco-Chr3:7294835 | Cco01g1448 | Cco-Chr1:26233303 | 5.00E-74 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0707 | - | - | - | 0.0 |