Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0707 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGACGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAATTCTTCTTCTTCCAGCGGAGGAATTCGCGCTCTCTGATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATGTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTCGTTTCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGGGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGCGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAGAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACCGTCCCAAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGTTCGATTATTAGATGGATGGAAGAAGGGCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTTCCAACCGTGCATTAAGGAATTTGATTGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAAATATGGATGCATCCGCAGAGAGTTATGCAATGGCTTCTCCCACACGAGCAGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCGTTGGATCGCAGGATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCCAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTCTGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACGGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTATGGCGGATTGGGGGTGGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGTGAGGTATCTGTGCCGATATCCATCTCGGTACCGGTCGTATAA 2148 46.51 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLTIVATELVSRFSEKFFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDERDEALRTRFLSFLDEFENGRLPNPGEMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSIIRWMEEGHNTCPKTGQMLIHTRLASNRALRNLIVQWCIAHGVPYDPPENMDASAESYAMASPTRAALEANRATAMILIQQLSVGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLEFCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7294835 7296982 + CcPI632755_03g007070.1 Cco03g0707 174066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0707 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco03g0707 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Cco03g0707 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Cco03g0707 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Cco03g0707 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Cco03g0707 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Cco03g0707 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Cco03g0707 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco03g0707 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco03g0707 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Cco03g0707 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Cco03g0707 715 SMART arm_5 463 504 IPR000225 GO:0005515(InterPro)
Cco03g0707 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Cco03g0707 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Cco03g0707 715 Coils Coil 212 232 - -
Cco03g0707 715 SUPERFAMILY RING/U-box 277 362 - -
Cco03g0707 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cco03g0707 715 Gene3D - 392 667 IPR011989 -
Cco03g0707 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0707 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0707 Cco-Chr3:7294835 Cco04g0823 Cco-Chr4:23607535 3.30E-102 dispersed
Cco03g0707 Cco-Chr3:7294835 Cco01g1448 Cco-Chr1:26233303 5.00E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g256 . Blo11g00265 . . . . Bma14g00979 . Cmo13g00612 Cmo18g00411 . . . . . Cpe09g00791 . . . . . . . . . . . . . . . . Cone5ag1640 . . . . Chy12g00056 . . . . Bda07g00963 . . . . Sed08g2733 . . Cma13g00582 Cma18g00432 Car13g00466 Car18g00408 . Cpe20g00479 Bhi08g02151 Tan05g2530 Cmetu12g0678 Lac10g0984 Hepe07g1836 . . Cla03g00696 Cam03g0697 Cec03g0670 Cco03g0707 Clacu03g0744 Cmu03g1336 Cre03g0979 Lsi02g00832 Csa01g02298 . Cme12g01264
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008312 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35