Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0708 ATGGATGAAGCTCAGGGAGGTGGCTTGACTTCGCTGCCTCCATTTTTAGTCAAAACGTATGATATGGTTGATGACCCTTCAACCAATTCGATTGTTTCATGGAGTTCTAGTGATAAAAGCTTTGTTGTTTGGAATCCACTGGAGTTCTCATCAGTTTTGTTGCCTAAATTCTTTAAGCATAGCAACTTCTCGAGCTTCATCAGGCAGCTCAATACTTATGGGTTCAGAAAGGTGGATCCCGAACAATGGGAATTTGCCAATGAGGATTTTGTTAGAGGTAAGCCACACCTGATGAAGAACATCCACAGGAGGAAACCCGTTCATTGTCATTCTTCACAGAACCTTCATGGACAAGGAATATCTCCTCCACTAACTGAAGTGGAAAGAAACAGTTTAAAGGATGACATCGAAAGACTGAAACTGGACAAAGAGCAGCTTCTTCTCGAGTTGCGAAAACACGAACAAGAGTATCAAGGAGTTGGATTGCAAATGCAGGATTTGAAAGATCGATTTCAACGTGTGCAACAAGAGATGCAATTATTTATCGGTCTGATGGCTCGCCTTTTGCAGAAACCGGGACTTCGCTTGGATCTCCTGCTACAATTGGAAACTCCTGAGAGAAAGAGGAGATTACCTAGAATTTCTTGCAACAAAAGTGAAGACAACCTTGAAGATAATCAGATGGGGACAACTCAAACAATTGGTAGAGAAGATATGGGTTGTAGTTTTGATCCAATTTTGAAAAAAGAGCAGTTTGAACTTGTTGAGACATCTCTGACCTTTTGGGAAGGCATTATCCACAGTTATGGCCAAGCAGTTAGTCCACTTGATTCAAGCTCAAACCTGGAGTTGGGTGGATCTATAAGTCTTGCCAGTAGCCCTGCTATATCTTGCAGACAAGTTAGTGAGGAATTTCGGTGTAAATCACCTGGAATTGACATGAATTTGGAGCCAATGGCAACCGCTGCTCCTGACTCTGTAGCCTCGAAAGATCAAGAAGCTGGAGTTAATGCTCCAGCACCAACTGGAGTTAATGATGTTTTCTGGCAGCAATTCTTGACAGAGAATCCTGGTGCATCTGACCCACAAGAAGTTCAATCGGCCAGAAAAGATTCAGATGTCTACGAAGAAAACAAACAGAGTGATCAGGGAAAATTTTGGTGGAACGCAAGGAGTGTAAATAATGTTGTAGAACAGATAGGGCACCTTAAACCAGCTGAGAAATTTTGA 1230 42.2 MDEAQGGGLTSLPPFLVKTYDMVDDPSTNSIVSWSSSDKSFVVWNPLEFSSVLLPKFFKHSNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGKPHLMKNIHRRKPVHCHSSQNLHGQGISPPLTEVERNSLKDDIERLKLDKEQLLLELRKHEQEYQGVGLQMQDLKDRFQRVQQEMQLFIGLMARLLQKPGLRLDLLLQLETPERKRRLPRISCNKSEDNLEDNQMGTTQTIGREDMGCSFDPILKKEQFELVETSLTFWEGIIHSYGQAVSPLDSSSNLELGGSISLASSPAISCRQVSEEFRCKSPGIDMNLEPMATAAPDSVASKDQEAGVNAPAPTGVNDVFWQQFLTENPGASDPQEVQSARKDSDVYEENKQSDQGKFWWNARSVNNVVEQIGHLKPAEKF 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7301702 7303039 - CcPI632755_03g007080.1 Cco03g0708 174067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0708 409 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0708 409 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0708 409 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0708 409 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0708 409 Coils Coil 129 170 - -
Cco03g0708 409 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 380 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cco03g0708 409 MobiDBLite consensus disorder prediction 366 380 - -
Cco03g0708 409 MobiDBLite consensus disorder prediction 355 382 - -
Cco03g0708 409 FunFam Heat shock transcription factor 1 8 105 - -
Cco03g0708 409 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0708 409 Gene3D - 9 105 IPR036388 -
Cco03g0708 409 SMART hsfneu3 11 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0708 409 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0708 K09419 - - csv:101204390 739.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0708 Cco-Chr3:7301702 Cco10g0148 Cco-Chr10:1415915 4.20E-49 dispersed
Cco05g0358 Cco-Chr5:2903919 Cco03g0708 Cco-Chr3:7301702 1.10E-53 transposed
Cco09g1202 Cco-Chr9:12017056 Cco03g0708 Cco-Chr3:7301702 2.40E-20 transposed
Cco02g1950 Cco-Chr2:32413050 Cco03g0708 Cco-Chr3:7301702 6.30E-55 wgd
Cco03g0708 Cco-Chr3:7301702 Cco04g2180 Cco-Chr4:35505100 5.00E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58929 PF00447 HSF_DNA-bind 4.20E-31 CL0123 Cco TF