Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0714 | ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTGTGGTGGATTGCTTCATGTTCTTCAGATTTGCAGATTCCAAGGTTCCCCAAGAAGAGGTTGATGTACTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCTTGTGCCGTTGAAATGTTTGGGGTGACAGAAAAATCTCCCAGGGGATCTGAGACTATAATTGGTTGTGATTGCAACATCGAGAACAGTACACTTTGTCACGTCGTAAGGATAGAATTCAAAAATCACAATCTGCCCGGTGTTCTTCCACCTGAAATAGTCAAACTTCCTTACCTGCAAGTAGTTGATTTTGCTTACAACTACCTTCATGGTAATATACCTCAGGAATGGGCTTCAATGCGGCTGACATCAATCTCTCTTCTTGTAAATCGGTTATCAGGGGAAATACCAGCGGAATTGGGGAATATTACTACTCTAACATTACTGAACCTTGAAGCAAACCAATTTACTGGTGCAATACCATCACAACTCGGGAGGTTAAGCAACCTGCAAGACTTGTTGCTATCATCTAATCAATTGTCTGGCACATTACCGACAACATTTGCTGGTTTGAAAAACCTAACAAATTTCCGGATAAATGATAACAACCTAAACGGAACCATACCTGAGTTCATACAGAATTGGATACTACTCAACAGATTAGAACTACATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATATCCCTTTTGAGGAACTTAAAAGAATTAAGGATCAGTGATATTAATGGGCCAAAGCAGGATTTTCCTGAGTTGAGAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATATGTGTGGATGTTACCAGACATGGAAATGCTGGACGTCAGCTTTAACCATATAACAGGGGAAATTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCGACCTACCAGAGTCAATCTTGAAGGATGGAACTAATGTCGATCTTTCATACAATAAATTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAGAATTTGAATATGAATCTGAACTTGTTTCGAAGTTCCTCCACCGGCAACACCTTACAAGAAAGTCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCGTTAATTCTGGTGGGAATGACTTAACTATGGAGGTAAACAACAGAAATGTTCTCTACAACGGGGATGCAGATGTTGAAGGTGGAACAGCAAAATTCTACATCGATCATGATAGCCACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTTTGATTACCAAAATACACGCTACACTTTATCCCTGCCTTCATCAAATTTGTCCGAGCTATATTCAACAGCACGTCGAAGTCCAATTACACTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTCAAGCTTCATTTTGCTGAGTTACAATTCACAGATGATAAGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATTGAAGAGAAGGCAGGAGGAGCTCAGAAACCAGCCGAATTGCAGTTTAATAACATTAGTGTAATTAATCATGTTCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACTAGAATTCCTGATAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAATCCGCGAAAGTGGTAAAAAGAAAATTGTAGCAATTGCTGTTGGCATTGCGGTTGGATTATTATGCCTTGCTACAGTCATTATAGTGGGACTTCTTTGGTGGAAAGGCACTCTTAGAGCAATCAGGCGGAGTAAAGGTGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACGTTGAAACAAATAAAAGCTGCCACCAATCATTTTGATTCTTGTAATAAGATTGGAGAAGGTGGCTTTGGCCCTGTTTATAAGGGTCAATTGGTTGATGGTACTATTGTAGCAATCAAGCAACTCTCGTCCAAATCAAAGCAGGGAAATCGCGAATTTCTCAATGAGATAGGAATGATCTCTTGTTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGATCAATTGTTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCAGATTATAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGCTTAGCATATCTCCATGAGGAATCAAGCCTCAAAATCGTTCACAGAGACATCAAAGCTACTAATGTGCTACTGGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGACGATGAGGAGAAGACTCATATCACCACTAGAGTGGCCGGGACTATAGGATATATGGCTCCAGAATATGCACTTTGGGGTTATCTGACCTACAAAGCAGATGTGTATAGTTTTGGAGTTGTGGCCTTGGAAATTGTAAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTTATGGAGTTGGTAGATGAGAAGTTGAAACCAGAAATCGACAGGAAAGAAGCAGAAAATATGGTGAAAATAGCCCTTCTCTGCACCAATGCTTCACCATCAGTAAGGCCTGTGATGTCGGAAGTGGTGAACATGCTCGAAGGACGAATGGCAATTCCAGACCTGATCCCGGAACCGAGCAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGAGATATGCGTAAACAGCAACAGAGCCAAAGCCTGAGTGAAAGCCAAACCCAAAATTCCACAATGCAAACATTTGAGTCTTCCACTACATCTGGAAATGAGTTCTATGACATCAACCCAGAGCCAAGATCATCAACAACCTGA | 3060 | 40.56 | MMVAKSFFVFIVLVVDCFMFFRFADSKVPQEEVDVLQQITRTLGAVYWKFNSDSCAVEMFGVTEKSPRGSETIIGCDCNIENSTLCHVVRIEFKNHNLPGVLPPEIVKLPYLQVVDFAYNYLHGNIPQEWASMRLTSISLLVNRLSGEIPAELGNITTLTLLNLEANQFTGAIPSQLGRLSNLQDLLLSSNQLSGTLPTTFAGLKNLTNFRINDNNLNGTIPEFIQNWILLNRLELHASGLQGPIPAKISLLRNLKELRISDINGPKQDFPELRNMTGMVRLVLRNCNIAGKIPSYVWMLPDMEMLDVSFNHITGEIPEDINMERIRFLFLSGNMLSGDLPESILKDGTNVDLSYNKLTWQGPEQHACRKNLNMNLNLFRSSSTGNTLQESLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNRNVLYNGDADVEGGTAKFYIDHDSHWGLSSTGDFMDDFDYQNTRYTLSLPSSNLSELYSTARRSPITLTYFHHCLDNGNYSVKLHFAELQFTDDKTYTSLGRRKFDIYIQDRLVLENFDIEEKAGGAQKPAELQFNNISVINHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVYSDLKYCSIRESGKKKIVAIAVGIAVGLLCLATVIIVGLLWWKGTLRAIRRSKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGQLVDGTIVAIKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLKPEIDRKEAENMVKIALLCTNASPSVRPVMSEVVNMLEGRMAIPDLIPEPSSYNEDLRFKAMRDMRKQQQSQSLSESQTQNSTMQTFESSTTSGNEFYDINPEPRSSTT | 1019 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7342403 | 7355336 | + | CcPI632755_03g007140.1 | Cco03g0714 | 174073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0714 | 1019 | Gene3D | Ribonuclease Inhibitor | 199 | 266 | IPR032675 | - | |
Cco03g0714 | 1019 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 404 | 599 | - | - | |
Cco03g0714 | 1019 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase RFK1 | 34 | 197 | - | - | |
Cco03g0714 | 1019 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase RFK1 | 266 | 387 | - | - | |
Cco03g0714 | 1019 | Gene3D | Ribonuclease Inhibitor | 47 | 198 | IPR032675 | - | |
Cco03g0714 | 1019 | Pfam | Leucine rich repeat | 158 | 217 | IPR001611 | GO:0005515(InterPro) | |
Cco03g0714 | 1019 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 17 | 973 | IPR051824 | - | |
Cco03g0714 | 1019 | Gene3D | Phosphorylase Kinase; domain 1 | 641 | 751 | - | - | |
Cco03g0714 | 1019 | Gene3D | Transferase(Phosphotransferase) domain 1 | 752 | 954 | - | - | |
Cco03g0714 | 1019 | Gene3D | Ribonuclease Inhibitor | 267 | 387 | IPR032675 | - | |
Cco03g0714 | 1019 | SUPERFAMILY | L domain-like | 76 | 319 | - | - | |
Cco03g0714 | 1019 | Gene3D | - | 405 | 600 | - | - | |
Cco03g0714 | 1019 | CDD | STKc_IRAK | 682 | 949 | - | - | |
Cco03g0714 | 1019 | MobiDBLite | consensus disorder prediction | 973 | 1019 | - | - | |
Cco03g0714 | 1019 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase isoform A | 198 | 264 | - | - | |
Cco03g0714 | 1019 | Pfam | Malectin domain | 406 | 594 | IPR021720 | - | |
Cco03g0714 | 1019 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 798 | 810 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0714 | 1019 | SUPERFAMILY | Protein kinase-like (PK-like) | 659 | 949 | IPR011009 | - | |
Cco03g0714 | 1019 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g53430 | 646 | 751 | - | - | |
Cco03g0714 | 1019 | MobiDBLite | consensus disorder prediction | 976 | 1019 | - | - | |
Cco03g0714 | 1019 | SMART | serkin_6 | 676 | 928 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0714 | 1019 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 752 | 958 | - | - | |
Cco03g0714 | 1019 | Pfam | Protein tyrosine and serine/threonine kinase | 680 | 947 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0714 | 1019 | ProSiteProfiles | Protein kinase domain profile. | 676 | 953 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0714 | Cco-Chr3:7342403 | Cco11g1782 | Cco-Chr11:30528443 | 1.90E-212 | dispersed | |
Cco03g0714 | Cco-Chr3:7342403 | Cco11g1781 | Cco-Chr11:30512746 | 1.30E-205 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86667 | PF07714 | PK_Tyr_Ser-Thr | 4.20E-48 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0714 | - | - | - | 0.0 |