Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0718 | ATGTTCGGGTGGTGTAATATATTTCTTTTTCCTGGATCCACGTCAGCCGTTGATCCACTTAATACGTCACGGCAAGTTGCTATCTATCATGGTACCGACCCCAGCACGACGTCGTATTCATACAACATCGTTTCACAGGAAAAAGACACCCATCCGCGTAAAAGGCAAGTTCGTCGTCATCCAGCCGTCAACGCGAGTAACAACGGGGTGAGGTTTTTGTTGGGAAAGCAATCGTCGATGGCGCCGGACCGGAAATCGGAGGAGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGGAAGACGGGGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTAGAAGGGATTAAGGAGCTTCTAGATTCTGGAATTGATGTCAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCAAGATCGTCGATTTATTGCTCCACCGTGGCGCTGAGATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAATCATGAAGTTATCAAATTGCTGGAAAAAAGAGGCGCAAAACATCTGATGGCTCCCATGCTTGTCAAGCATGCTCGTGAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGTACCTTCCATCTTGCATCATGGCGCGGAATCCAAGTTGCAGTCAAAGAGCTTCCGGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTGTTACAGAGAAAAGGAGCATTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAATAAACCTGCCCCGATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAATTGCTCACAGTCAAGGAGGATAAACCTCTAATTTGTCAAGACACTGCTTGCCGATATGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTAGATGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAACCACCGTTTTCAAACAAAAGGGAAAATGCCATTCTTAAAGAGTATGCAGCCGGAGTACGCCCTCCTTTTAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGATTGCTGGGATGAGAAGCCATCAAAGAGACCAACTTTTAGGCAGATAATCACGAGGCTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACAATGAGATGTTTTCAGGATCCAGAAGCTAAGATAAGAAGAGACCATCTCTCAAGCAGCCGGAGCCTTTCATCGCGATCTGCAAGCAGCATATGA | 1575 | 45.52 | MFGWCNIFLFPGSTSAVDPLNTSRQVAIYHGTDPSTTSYSYNIVSQEKDTHPRKRQVRRHPAVNASNNGVRFLLGKQSSMAPDRKSEEEAEAEAEAEAAEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFHDVDNRTALHVAACQGCSKIVDLLLHRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQRKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLICQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKRENAILKEYAAGVRPPFKAPAKCYAHGIKELIEDCWDEKPSKRPTFRQIITRLETIHHSLSHRRRWKLPTMRCFQDPEAKIRRDHLSSSRSLSSRSASSI | 524 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7372282 | 7377977 | + | CcPI632755_03g007180.1 | Cco03g0718 | 174077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0718 | 524 | ProSiteProfiles | Ankyrin repeat profile. | 139 | 171 | IPR002110 | GO:0005515(InterPro) | |
Cco03g0718 | 524 | Gene3D | Transferase(Phosphotransferase) domain 1 | 300 | 515 | - | - | |
Cco03g0718 | 524 | SMART | ANK_2a | 172 | 201 | IPR002110 | GO:0005515(InterPro) | |
Cco03g0718 | 524 | SMART | ANK_2a | 106 | 135 | IPR002110 | GO:0005515(InterPro) | |
Cco03g0718 | 524 | SMART | ANK_2a | 139 | 168 | IPR002110 | GO:0005515(InterPro) | |
Cco03g0718 | 524 | Gene3D | - | 75 | 211 | IPR036770 | - | |
Cco03g0718 | 524 | Pfam | Protein tyrosine and serine/threonine kinase | 236 | 477 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0718 | 524 | CDD | STKc_MAP3K-like | 233 | 477 | - | - | |
Cco03g0718 | 524 | ProSiteProfiles | Ankyrin repeat region circular profile. | 139 | 171 | - | - | |
Cco03g0718 | 524 | MobiDBLite | consensus disorder prediction | 74 | 102 | - | - | |
Cco03g0718 | 524 | FunFam | Integrin-linked protein kinase family | 89 | 215 | - | - | |
Cco03g0718 | 524 | ProSiteProfiles | Protein kinase domain profile. | 189 | 484 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0718 | 524 | Gene3D | Phosphorylase Kinase; domain 1 | 223 | 299 | - | - | |
Cco03g0718 | 524 | FunFam | serine/threonine-protein kinase STY46-like | 217 | 300 | - | - | |
Cco03g0718 | 524 | Pfam | Ankyrin repeats (3 copies) | 111 | 198 | IPR002110 | GO:0005515(InterPro) | |
Cco03g0718 | 524 | FunFam | Os01g0748600 protein | 210 | 497 | - | - | |
Cco03g0718 | 524 | SUPERFAMILY | Protein kinase-like (PK-like) | 233 | 480 | IPR011009 | - | |
Cco03g0718 | 524 | PIRSF | ILK | 42 | 499 | - | - | |
Cco03g0718 | 524 | SUPERFAMILY | Ankyrin repeat | 111 | 199 | IPR036770 | - | |
Cco03g0718 | 524 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 102 | 478 | IPR051681 | GO:0004674(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0718 | Cco-Chr3:7372282 | Cco05g1761 | Cco-Chr5:26025966 | 2.40E-41 | dispersed | |
Cco05g2670 | Cco-Chr5:34735180 | Cco03g0718 | Cco-Chr3:7372282 | 6.00E-81 | transposed | |
Cco09g1497 | Cco-Chr9:20461374 | Cco03g0718 | Cco-Chr3:7372282 | 4.00E-88 | transposed | |
Cco02g1958 | Cco-Chr2:32505450 | Cco03g0718 | Cco-Chr3:7372282 | 6.30E-141 | wgd | |
Cco03g0718 | Cco-Chr3:7372282 | Cco04g2191 | Cco-Chr4:35553621 | 2.80E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86668 | PF07714 | PK_Tyr_Ser-Thr | 7.40E-55 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0718 | - | - | - | 0.0 |