Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0718 ATGTTCGGGTGGTGTAATATATTTCTTTTTCCTGGATCCACGTCAGCCGTTGATCCACTTAATACGTCACGGCAAGTTGCTATCTATCATGGTACCGACCCCAGCACGACGTCGTATTCATACAACATCGTTTCACAGGAAAAAGACACCCATCCGCGTAAAAGGCAAGTTCGTCGTCATCCAGCCGTCAACGCGAGTAACAACGGGGTGAGGTTTTTGTTGGGAAAGCAATCGTCGATGGCGCCGGACCGGAAATCGGAGGAGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGGAAGACGGGGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTAGAAGGGATTAAGGAGCTTCTAGATTCTGGAATTGATGTCAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCAAGATCGTCGATTTATTGCTCCACCGTGGCGCTGAGATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAATCATGAAGTTATCAAATTGCTGGAAAAAAGAGGCGCAAAACATCTGATGGCTCCCATGCTTGTCAAGCATGCTCGTGAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGTACCTTCCATCTTGCATCATGGCGCGGAATCCAAGTTGCAGTCAAAGAGCTTCCGGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTGTTACAGAGAAAAGGAGCATTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAATAAACCTGCCCCGATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAATTGCTCACAGTCAAGGAGGATAAACCTCTAATTTGTCAAGACACTGCTTGCCGATATGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTAGATGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAACCACCGTTTTCAAACAAAAGGGAAAATGCCATTCTTAAAGAGTATGCAGCCGGAGTACGCCCTCCTTTTAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGATTGCTGGGATGAGAAGCCATCAAAGAGACCAACTTTTAGGCAGATAATCACGAGGCTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACAATGAGATGTTTTCAGGATCCAGAAGCTAAGATAAGAAGAGACCATCTCTCAAGCAGCCGGAGCCTTTCATCGCGATCTGCAAGCAGCATATGA 1575 45.52 MFGWCNIFLFPGSTSAVDPLNTSRQVAIYHGTDPSTTSYSYNIVSQEKDTHPRKRQVRRHPAVNASNNGVRFLLGKQSSMAPDRKSEEEAEAEAEAEAAEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFHDVDNRTALHVAACQGCSKIVDLLLHRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQRKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLICQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKRENAILKEYAAGVRPPFKAPAKCYAHGIKELIEDCWDEKPSKRPTFRQIITRLETIHHSLSHRRRWKLPTMRCFQDPEAKIRRDHLSSSRSLSSRSASSI 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7372282 7377977 + CcPI632755_03g007180.1 Cco03g0718 174077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0718 524 ProSiteProfiles Ankyrin repeat profile. 139 171 IPR002110 GO:0005515(InterPro)
Cco03g0718 524 Gene3D Transferase(Phosphotransferase) domain 1 300 515 - -
Cco03g0718 524 SMART ANK_2a 172 201 IPR002110 GO:0005515(InterPro)
Cco03g0718 524 SMART ANK_2a 106 135 IPR002110 GO:0005515(InterPro)
Cco03g0718 524 SMART ANK_2a 139 168 IPR002110 GO:0005515(InterPro)
Cco03g0718 524 Gene3D - 75 211 IPR036770 -
Cco03g0718 524 Pfam Protein tyrosine and serine/threonine kinase 236 477 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0718 524 CDD STKc_MAP3K-like 233 477 - -
Cco03g0718 524 ProSiteProfiles Ankyrin repeat region circular profile. 139 171 - -
Cco03g0718 524 MobiDBLite consensus disorder prediction 74 102 - -
Cco03g0718 524 FunFam Integrin-linked protein kinase family 89 215 - -
Cco03g0718 524 ProSiteProfiles Protein kinase domain profile. 189 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0718 524 Gene3D Phosphorylase Kinase; domain 1 223 299 - -
Cco03g0718 524 FunFam serine/threonine-protein kinase STY46-like 217 300 - -
Cco03g0718 524 Pfam Ankyrin repeats (3 copies) 111 198 IPR002110 GO:0005515(InterPro)
Cco03g0718 524 FunFam Os01g0748600 protein 210 497 - -
Cco03g0718 524 SUPERFAMILY Protein kinase-like (PK-like) 233 480 IPR011009 -
Cco03g0718 524 PIRSF ILK 42 499 - -
Cco03g0718 524 SUPERFAMILY Ankyrin repeat 111 199 IPR036770 -
Cco03g0718 524 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 102 478 IPR051681 GO:0004674(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0718 Cco-Chr3:7372282 Cco05g1761 Cco-Chr5:26025966 2.40E-41 dispersed
Cco05g2670 Cco-Chr5:34735180 Cco03g0718 Cco-Chr3:7372282 6.00E-81 transposed
Cco09g1497 Cco-Chr9:20461374 Cco03g0718 Cco-Chr3:7372282 4.00E-88 transposed
Cco02g1958 Cco-Chr2:32505450 Cco03g0718 Cco-Chr3:7372282 6.30E-141 wgd
Cco03g0718 Cco-Chr3:7372282 Cco04g2191 Cco-Chr4:35553621 2.80E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86668 PF07714 PK_Tyr_Ser-Thr 7.40E-55 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0718 - - - 0.0