Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0720 ATGAGTTTTGATAATGAAGAGTCAACAGGAGCAGAAAGAAGATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAAAGAATTGAAAATACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAATGGTTTGCTTAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCACTCGTGGTCGTCTCTATGAATATGCCAACAACAGTGTGAGGGCTACGATTTCGAGGTACAAAAAAGCATGTTCGGATCCCTCCAGCACCGTATCGGTTTCGGAAGCCAATACTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGAGCTCAAATCGGGAATTTGCAAAACCTAAACAGGCATTTGTTGGGAGAATCGATTAGTTCGTTGTCCGTTAAAGATCTGAAAAGCCTGGAGATCAAACTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAATACATGCAGAAAAGGGAAATTGAACTGTACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGACAGAGAGAAGCCAACAAAACACAAGTGGAAATAATGCAATAGCAGGAAGAGGAAGAGGAGAGCAAGGATCTGTGGCTCCAAATTTAGAGGTTAATCATAATAATCAATATGACCCAACAAATTACTTTCCCCATCATAATCATCATATGTCTCTGCAACTTGTGTGA 741 39.95 MSFDNEESTGAERRSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPSSTVSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEIKLEKGISRIRSRKNELLFAEIEYMQKREIELYNNNQLIRAKIAETERSQQNTSGNNAIAGRGRGEQGSVAPNLEVNHNNQYDPTNYFPHHNHHMSLQLV 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7396523 7403790 + CcPI632755_03g007200.1 Cco03g0720 174079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0720 246 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Cco03g0720 246 SMART madsneu2 19 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 Gene3D - 31 98 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 216 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco03g0720 246 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 MobiDBLite consensus disorder prediction 191 221 - -
Cco03g0720 246 SUPERFAMILY SRF-like 20 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 MobiDBLite consensus disorder prediction 191 206 - -
Cco03g0720 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco03g0720 246 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco03g0720 246 MobiDBLite consensus disorder prediction 1 25 - -
Cco03g0720 246 CDD MADS_MEF2_like 20 93 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco03g0720 246 Pfam K-box region 102 189 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco03g0720 246 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0720 Cco-Chr3:7396523 Cco08g0096 Cco-Chr8:1584628 2.70E-72 dispersed
Cco02g1961 Cco-Chr2:32534100 Cco03g0720 Cco-Chr3:7396523 6.00E-57 wgd
Cco03g0720 Cco-Chr3:7396523 Cco04g2193 Cco-Chr4:35570562 3.00E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58931 PF01486 K-box 4.90E-26 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0720 K09264 - csv:101205366 391.734