Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0720 | ATGAGTTTTGATAATGAAGAGTCAACAGGAGCAGAAAGAAGATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAAAGAATTGAAAATACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAATGGTTTGCTTAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCACTCGTGGTCGTCTCTATGAATATGCCAACAACAGTGTGAGGGCTACGATTTCGAGGTACAAAAAAGCATGTTCGGATCCCTCCAGCACCGTATCGGTTTCGGAAGCCAATACTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGAGCTCAAATCGGGAATTTGCAAAACCTAAACAGGCATTTGTTGGGAGAATCGATTAGTTCGTTGTCCGTTAAAGATCTGAAAAGCCTGGAGATCAAACTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAATACATGCAGAAAAGGGAAATTGAACTGTACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGACAGAGAGAAGCCAACAAAACACAAGTGGAAATAATGCAATAGCAGGAAGAGGAAGAGGAGAGCAAGGATCTGTGGCTCCAAATTTAGAGGTTAATCATAATAATCAATATGACCCAACAAATTACTTTCCCCATCATAATCATCATATGTCTCTGCAACTTGTGTGA | 741 | 39.95 | MSFDNEESTGAERRSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPSSTVSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEIKLEKGISRIRSRKNELLFAEIEYMQKREIELYNNNQLIRAKIAETERSQQNTSGNNAIAGRGRGEQGSVAPNLEVNHNNQYDPTNYFPHHNHHMSLQLV | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7396523 | 7403790 | + | CcPI632755_03g007200.1 | Cco03g0720 | 174079 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0720 | 246 | FunFam | agamous-like MADS-box protein AGL11 | 31 | 114 | - | - | |
Cco03g0720 | 246 | SMART | madsneu2 | 19 | 78 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | Gene3D | - | 31 | 98 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | ProSitePatterns | MADS-box domain signature. | 21 | 75 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 20 | 216 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco03g0720 | 246 | PRINTS | MADS domain signature | 41 | 56 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | PRINTS | MADS domain signature | 21 | 41 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | PRINTS | MADS domain signature | 56 | 77 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | MobiDBLite | consensus disorder prediction | 191 | 221 | - | - | |
Cco03g0720 | 246 | SUPERFAMILY | SRF-like | 20 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | MobiDBLite | consensus disorder prediction | 191 | 206 | - | - | |
Cco03g0720 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 28 | 75 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | ProSiteProfiles | K-box domain profile. | 105 | 195 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco03g0720 | 246 | ProSiteProfiles | MADS-box domain profile. | 19 | 79 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco03g0720 | 246 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cco03g0720 | 246 | CDD | MADS_MEF2_like | 20 | 93 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco03g0720 | 246 | Pfam | K-box region | 102 | 189 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco03g0720 | 246 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0720 | Cco-Chr3:7396523 | Cco08g0096 | Cco-Chr8:1584628 | 2.70E-72 | dispersed | |
Cco02g1961 | Cco-Chr2:32534100 | Cco03g0720 | Cco-Chr3:7396523 | 6.00E-57 | wgd | |
Cco03g0720 | Cco-Chr3:7396523 | Cco04g2193 | Cco-Chr4:35570562 | 3.00E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58931 | PF01486 | K-box | 4.90E-26 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0720 | K09264 | - | csv:101205366 | 391.734 |