Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0723 ATGTTTACAGGACTTGTGTATCAATCAATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGGTTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTCTCAATGAAGAAGCACGAGATGCTTACAGTCTGGGAGAAGTCAACAGTTACGATCTCTTCACATTTGCTGGTGATAGTTGTGGGTCATTTAATGAGGAAGAGCTCTTAGAAGGGATATCAGTGGTAAAAGATATCTTTGATGGATTCCAAAGGCCAGAAGGGAGGACTTCTAAGCAACGTCTTCTAGTTGTAGCAAACAGGTTACCTGTATCTGCTGTTAGGAAAGGGAAGGAGGCATGGCATCTTGAAATCAGCGTGGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTCGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCTTAGAGAAGGCATTAGCTGAAAAGAAATGCATACCAGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGGCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCGTCTCGTTCAGAGCTGTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCCTGCACCCGTATTCTTGGATTAGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCAATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAATTACAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGACAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAATATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTGGATCGTTCCCTTGACTTCCATGCATTATGTGCTTTATATGCGGTCACTGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCCGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGACGAAAGAGAAAGGCGACACCATCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAACGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTTCTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGCTCACACAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATCCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTCGGCGATTACAACATGTGGTTGGCAGCAGAAAATGGGATGTTCTTACGTCCGACAAAGGGCGAATGGATGACGACAATGCCCGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACGGAAAGAACTCCTAGATCCCATTTTGAGCTTCGCGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCACCTATGGACTGGTCCAATCTCAAATGCATCGGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTTCTGAAGTGCCACCTGCAGCAAGAACAACAGTTGCCAATCCATTCGGAGGAGTACCGGTGCCAAAGATCTCAAACAATGGAGCCCCACCAAGCAGGTCGGCACGCCTCAAGAAACAGCGCTCCCTTTCCATTTTAGAAAGAAGAGCAAATAGCCATGGGAGTGCAGTGTTTTGGAGGCCTATAGTGCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACGATTACTTCTCCTGTGCTGTGGGGCGGAAACGATCCAGTGCTAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAATTGTCAGAATGTTCAGAGTCAAACCAAATTGCTAAAAACGAGCTTGAAAATATGAATACGACGAAGTTGGAAGAGGAGATACATAAGAAGAAAGCCATGGATACTTTCTTCACTCCAAGCGAGCTCTCCAGAGCCATAGGACTATTCAGAAATCTGAGAGGGGTAAGATCGTAA 2970 43.16 MFTGLVYQSMLSNNHNNSPPTPRTRLERLLRERELRRSNRSSLNEEARDAYSLGEVNSYDLFTFAGDSCGSFNEEELLEGISVVKDIFDGFQRPEGRTSKQRLLVVANRLPVSAVRKGKEAWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPFLPIREAVNCYSRSHNRLVILGFNATLTEAVDPLGRRYGQIRDMDLKVHPDVREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPAARTTVANPFGGVPVPKISNNGAPPSRSARLKKQRSLSILERRANSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSSARYLLGSSDDVVTLVKELSECSESNQIAKNELENMNTTKLEEEIHKKKAMDTFFTPSELSRAIGLFRNLRGVRS 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7437906 7445953 + CcPI632755_03g007230.1 Cco03g0723 174082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0723 989 Pfam Glycosyltransferase family 20 102 567 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco03g0723 989 Coils Coil 26 46 - -
Cco03g0723 989 Pfam Trehalose-phosphatase 625 824 IPR003337 GO:0005992(InterPro)
Cco03g0723 989 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 94 348 - -
Cco03g0723 989 CDD HAD_TPP 600 820 - -
Cco03g0723 989 Gene3D Glycogen Phosphorylase B; 349 551 - -
Cco03g0723 989 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 349 551 - -
Cco03g0723 989 FunFam Alpha,alpha-trehalose-phosphate synthase 626 695 - -
Cco03g0723 989 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 570 - -
Cco03g0723 989 CDD GT20_TPS 102 567 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cco03g0723 989 Gene3D Glycogen Phosphorylase B; 94 348 - -
Cco03g0723 989 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 97 935 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cco03g0723 989 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 692 772 - -
Cco03g0723 989 Gene3D - 692 772 - -
Cco03g0723 989 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 102 567 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cco03g0723 989 Coils Coil 933 953 - -
Cco03g0723 989 Gene3D - 626 815 IPR023214 -
Cco03g0723 989 SUPERFAMILY HAD-like 601 931 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0723 Cco-Chr3:7437906 Cco10g0149 Cco-Chr10:1434337 2.80E-123 dispersed
Cco11g1775 Cco-Chr11:30452428 Cco03g0723 Cco-Chr3:7437906 0.00E+00 transposed
Cco03g0723 Cco-Chr3:7437906 Cco07g0256 Cco-Chr7:2609373 4.40E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0723 K16055 - csv:101213690 1772.29