Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0726 | ATGGTAGTCGAAGAGACGATCAAAGCTACATCCACGGAAGATCTTTCTAATACCATTGCAAATCAAAACCCTAGAGGACGAGGCGGTGATGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGAGACGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCTAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAGGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGACCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGGAAACAGTGGAAGGAGTTTCTTGATTACAATGACAGCATTGGCTTTATATTCCACGAAGATGCGAAGAAATTCGACAGACAGGCAAAGAACAAATATTCGGAATTTGTGGAAATCGCCATTGCTCATAACAAGCACCTGAATCTCAGATTCTTGTTCTTTGAGAGCTATGAAAATTTCCCGCCATTTCCGTGTCTTCTTCCAAGACCTCCTCAATCTCCAAGACTAGATTGGTTTCTGAAGCGGACAAAACCTCCGAAGAGCTATCGACCGTGTCGAGCAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATTATGTTGCCGATCCATATTAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGCCCTTCCCACCTCCAAGCACATTGATTACTGTATGCATAGAATAAATCTGCTCCGGCACTATGGAGTGAAACCTGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTCGCACGTGCAATAGAACATGAGGCGAATGGAAATTCTGCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATAACGCCCTTGATCGCCCATGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCATATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACCGAGGACTCTGATCTCATACCATTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGGTATGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTGCCATCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGACAAGGTGATTAGACACTTGAGGTACAGCACAGTTTCAGTTCCTCATCTGTATGAAGAATCATTCAAGAAAGCGATATTGACTTTTCAGCATCAACGGGTTTACGACCCTATCACTGAAGAAATCGTACATCTATCCCAAATATCCAGCCATATAGGAGATGACTTGGATTTCCTGGGCCCATATCCTTTTCTTTGGAGCTCATTCCAATTTTCTGAGCAGAATATCAACACCGGAGTCGTGCATGAAAGACCTTACATATTAAAAGAATTCAACCCCGGAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTCACGAAATACTTTTGTTTTGCTTCTCTTGAGGCCAAGAGAAAATTTAGGGCGCCAAAACGATCAGCTAATCAACCAAGCTTCAGGGATGACACCTCAATTGGTGCCGAGGAGCCAGTTGGTCCTGAAGATATTTGCTCTCCAGCTTCTACCAATCACGGTGAAAATGTAGAGGGCTGTCCATCTACTTATCCTGTAAGAAATGATAATGCAGATGGATTTCCTCTTTCTGATTCTTGCAATCAGAGTAAGGATATGGTCAGTAATAAGATGGAAGAAGCGAAGCATATTTTACTTCAGCAACACACTCGATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAAACCCGATTGTGAGAAGTTTCCTGATACAACTGGAGAAAAAGTGAGGAAAGAGAACAAAAGGGTCATTGTAAGGAGTTCTTACTTCAAGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAGCTTTCTGACCAGAAAAATGCAGATGTTGCTGTGCATGAGATAACCACTCCCGAGGTTGCCTCTTTTATTAGTAGTTCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTCCAAATGAAAGCATTCAAATGGACAATGTGAAAACGAAACATTTGTGTAAGGATACATCGCAAGCTGATCATGTACTGGAGACAAAAAGTGAAGAAGGGAAGTTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCAGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTCGAGCCAGCGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACTTCAGCCAATTTTCTTATGTACCAAATAAGCACAGGGACCCCTTGCAATTCCGAAAAGGAAGACAATGA | 2892 | 42.6 | MVVEETIKATSTEDLSNTIANQNPRGRGGDEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRPGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHEDAKKFDRQAKNKYSEFVEIAIAHNKHLNLRFLFFESYENFPPFPCLLPRPPQSPRLDWFLKRTKPPKSYRPCRAMGIQGLLPLLKSIMLPIHIKDLEGSSVAIDTYSWLHKGAFSCSKELCNALPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHEANGNSAAAYECYQKAVDITPLIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLRYSTVSVPHLYEESFKKAILTFQHQRVYDPITEEIVHLSQISSHIGDDLDFLGPYPFLWSSFQFSEQNINTGVVHERPYILKEFNPGSVKKKLDLPVQKNVLTKYFCFASLEAKRKFRAPKRSANQPSFRDDTSIGAEEPVGPEDICSPASTNHGENVEGCPSTYPVRNDNADGFPLSDSCNQSKDMVSNKMEEAKHILLQQHTRSIHKPCVTLHKKPDCEKFPDTTGEKVRKENKRVIVRSSYFKHKPESNDEQENNQKLSDQKNADVAVHEITTPEVASFISSSCDGSITKRKASPNESIQMDNVKTKHLCKDTSQADHVLETKSEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDFSQFSYVPNKHRDPLQFRKGRQ | 963 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7477339 | 7486917 | - | CcPI632755_03g007260.1 | Cco03g0726 | 174085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0726 | 963 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 506 | 621 | IPR036279 | - | |
Cco03g0726 | 963 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 52 | 235 | IPR023398 | - | |
Cco03g0726 | 963 | SUPERFAMILY | PIN domain-like | 296 | 520 | IPR029060 | - | |
Cco03g0726 | 963 | Pfam | XPG N-terminal domain | 295 | 392 | IPR006085 | GO:0004518(InterPro) | |
Cco03g0726 | 963 | FunFam | Exonuclease 1, putative | 295 | 501 | - | - | |
Cco03g0726 | 963 | CDD | H3TH_EXO1 | 508 | 579 | IPR037315 | GO:0003677(InterPro)|GO:0035312(InterPro) | |
Cco03g0726 | 963 | FunFam | exonuclease 1 | 503 | 575 | - | - | |
Cco03g0726 | 963 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 116 | 139 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Cco03g0726 | 963 | FunFam | Eukaryotic translation initiation factor 4E | 51 | 235 | - | - | |
Cco03g0726 | 963 | Gene3D | - | 504 | 575 | - | - | |
Cco03g0726 | 963 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 452 | 472 | IPR006084 | - | |
Cco03g0726 | 963 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 367 | 386 | IPR006084 | - | |
Cco03g0726 | 963 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 510 | 525 | IPR006084 | - | |
Cco03g0726 | 963 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 431 | 448 | IPR006084 | - | |
Cco03g0726 | 963 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 318 | 332 | IPR006084 | - | |
Cco03g0726 | 963 | ProSitePatterns | XPG protein signature 1. | 365 | 379 | IPR019974 | GO:0016788(InterPro) | |
Cco03g0726 | 963 | Gene3D | - | 295 | 501 | - | - | |
Cco03g0726 | 963 | Pfam | Eukaryotic initiation factor 4E | 61 | 213 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cco03g0726 | 963 | Pfam | XPG I-region | 435 | 520 | IPR006086 | GO:0004518(InterPro) | |
Cco03g0726 | 963 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cco03g0726 | 963 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
Cco03g0726 | 963 | SMART | xpgineu | 432 | 502 | IPR006086 | GO:0004518(InterPro) | |
Cco03g0726 | 963 | SMART | HhH_4 | 507 | 540 | IPR008918 | GO:0003677(InterPro)|GO:0003824(InterPro) | |
Cco03g0726 | 963 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 295 | 914 | IPR006084 | GO:0017108(PANTHER) | |
Cco03g0726 | 963 | SMART | xpgn3 | 295 | 393 | IPR006085 | GO:0004518(InterPro) | |
Cco03g0726 | 963 | CDD | PIN_EXO1 | 295 | 496 | IPR044752 | GO:0046872(InterPro) | |
Cco03g0726 | 963 | MobiDBLite | consensus disorder prediction | 669 | 715 | - | - | |
Cco03g0726 | 963 | MobiDBLite | consensus disorder prediction | 794 | 811 | - | - | |
Cco03g0726 | 963 | SUPERFAMILY | eIF4e-like | 56 | 231 | IPR023398 | - | |
Cco03g0726 | 963 | MobiDBLite | consensus disorder prediction | 794 | 816 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1663 | Cco-Chr1:29386459 | Cco03g0726 | Cco-Chr3:7477339 | 8.80E-77 | dispersed | |
Cco03g0726 | Cco-Chr3:7477339 | Cco06g0761 | Cco-Chr6:8741529 | 6.10E-59 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0726 | K10746 | - | csv:101214177 | 1182.93 |