Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0726 ATGGTAGTCGAAGAGACGATCAAAGCTACATCCACGGAAGATCTTTCTAATACCATTGCAAATCAAAACCCTAGAGGACGAGGCGGTGATGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGAGACGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCTAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAGGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGACCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGGAAACAGTGGAAGGAGTTTCTTGATTACAATGACAGCATTGGCTTTATATTCCACGAAGATGCGAAGAAATTCGACAGACAGGCAAAGAACAAATATTCGGAATTTGTGGAAATCGCCATTGCTCATAACAAGCACCTGAATCTCAGATTCTTGTTCTTTGAGAGCTATGAAAATTTCCCGCCATTTCCGTGTCTTCTTCCAAGACCTCCTCAATCTCCAAGACTAGATTGGTTTCTGAAGCGGACAAAACCTCCGAAGAGCTATCGACCGTGTCGAGCAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATTATGTTGCCGATCCATATTAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGCCCTTCCCACCTCCAAGCACATTGATTACTGTATGCATAGAATAAATCTGCTCCGGCACTATGGAGTGAAACCTGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTCGCACGTGCAATAGAACATGAGGCGAATGGAAATTCTGCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATAACGCCCTTGATCGCCCATGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCATATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACCGAGGACTCTGATCTCATACCATTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGGTATGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTGCCATCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGACAAGGTGATTAGACACTTGAGGTACAGCACAGTTTCAGTTCCTCATCTGTATGAAGAATCATTCAAGAAAGCGATATTGACTTTTCAGCATCAACGGGTTTACGACCCTATCACTGAAGAAATCGTACATCTATCCCAAATATCCAGCCATATAGGAGATGACTTGGATTTCCTGGGCCCATATCCTTTTCTTTGGAGCTCATTCCAATTTTCTGAGCAGAATATCAACACCGGAGTCGTGCATGAAAGACCTTACATATTAAAAGAATTCAACCCCGGAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTCACGAAATACTTTTGTTTTGCTTCTCTTGAGGCCAAGAGAAAATTTAGGGCGCCAAAACGATCAGCTAATCAACCAAGCTTCAGGGATGACACCTCAATTGGTGCCGAGGAGCCAGTTGGTCCTGAAGATATTTGCTCTCCAGCTTCTACCAATCACGGTGAAAATGTAGAGGGCTGTCCATCTACTTATCCTGTAAGAAATGATAATGCAGATGGATTTCCTCTTTCTGATTCTTGCAATCAGAGTAAGGATATGGTCAGTAATAAGATGGAAGAAGCGAAGCATATTTTACTTCAGCAACACACTCGATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAAACCCGATTGTGAGAAGTTTCCTGATACAACTGGAGAAAAAGTGAGGAAAGAGAACAAAAGGGTCATTGTAAGGAGTTCTTACTTCAAGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAGCTTTCTGACCAGAAAAATGCAGATGTTGCTGTGCATGAGATAACCACTCCCGAGGTTGCCTCTTTTATTAGTAGTTCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTCCAAATGAAAGCATTCAAATGGACAATGTGAAAACGAAACATTTGTGTAAGGATACATCGCAAGCTGATCATGTACTGGAGACAAAAAGTGAAGAAGGGAAGTTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCAGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTCGAGCCAGCGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACTTCAGCCAATTTTCTTATGTACCAAATAAGCACAGGGACCCCTTGCAATTCCGAAAAGGAAGACAATGA 2892 42.6 MVVEETIKATSTEDLSNTIANQNPRGRGGDEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRPGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHEDAKKFDRQAKNKYSEFVEIAIAHNKHLNLRFLFFESYENFPPFPCLLPRPPQSPRLDWFLKRTKPPKSYRPCRAMGIQGLLPLLKSIMLPIHIKDLEGSSVAIDTYSWLHKGAFSCSKELCNALPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHEANGNSAAAYECYQKAVDITPLIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLRYSTVSVPHLYEESFKKAILTFQHQRVYDPITEEIVHLSQISSHIGDDLDFLGPYPFLWSSFQFSEQNINTGVVHERPYILKEFNPGSVKKKLDLPVQKNVLTKYFCFASLEAKRKFRAPKRSANQPSFRDDTSIGAEEPVGPEDICSPASTNHGENVEGCPSTYPVRNDNADGFPLSDSCNQSKDMVSNKMEEAKHILLQQHTRSIHKPCVTLHKKPDCEKFPDTTGEKVRKENKRVIVRSSYFKHKPESNDEQENNQKLSDQKNADVAVHEITTPEVASFISSSCDGSITKRKASPNESIQMDNVKTKHLCKDTSQADHVLETKSEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDFSQFSYVPNKHRDPLQFRKGRQ 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7477339 7486917 - CcPI632755_03g007260.1 Cco03g0726 174085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0726 963 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 506 621 IPR036279 -
Cco03g0726 963 Gene3D RNA Cap, Translation Initiation Factor Eif4e 52 235 IPR023398 -
Cco03g0726 963 SUPERFAMILY PIN domain-like 296 520 IPR029060 -
Cco03g0726 963 Pfam XPG N-terminal domain 295 392 IPR006085 GO:0004518(InterPro)
Cco03g0726 963 FunFam Exonuclease 1, putative 295 501 - -
Cco03g0726 963 CDD H3TH_EXO1 508 579 IPR037315 GO:0003677(InterPro)|GO:0035312(InterPro)
Cco03g0726 963 FunFam exonuclease 1 503 575 - -
Cco03g0726 963 ProSitePatterns Eukaryotic initiation factor 4E signature. 116 139 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Cco03g0726 963 FunFam Eukaryotic translation initiation factor 4E 51 235 - -
Cco03g0726 963 Gene3D - 504 575 - -
Cco03g0726 963 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 452 472 IPR006084 -
Cco03g0726 963 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 367 386 IPR006084 -
Cco03g0726 963 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 510 525 IPR006084 -
Cco03g0726 963 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 431 448 IPR006084 -
Cco03g0726 963 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 318 332 IPR006084 -
Cco03g0726 963 ProSitePatterns XPG protein signature 1. 365 379 IPR019974 GO:0016788(InterPro)
Cco03g0726 963 Gene3D - 295 501 - -
Cco03g0726 963 Pfam Eukaryotic initiation factor 4E 61 213 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cco03g0726 963 Pfam XPG I-region 435 520 IPR006086 GO:0004518(InterPro)
Cco03g0726 963 MobiDBLite consensus disorder prediction 1 36 - -
Cco03g0726 963 MobiDBLite consensus disorder prediction 9 24 - -
Cco03g0726 963 SMART xpgineu 432 502 IPR006086 GO:0004518(InterPro)
Cco03g0726 963 SMART HhH_4 507 540 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cco03g0726 963 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 295 914 IPR006084 GO:0017108(PANTHER)
Cco03g0726 963 SMART xpgn3 295 393 IPR006085 GO:0004518(InterPro)
Cco03g0726 963 CDD PIN_EXO1 295 496 IPR044752 GO:0046872(InterPro)
Cco03g0726 963 MobiDBLite consensus disorder prediction 669 715 - -
Cco03g0726 963 MobiDBLite consensus disorder prediction 794 811 - -
Cco03g0726 963 SUPERFAMILY eIF4e-like 56 231 IPR023398 -
Cco03g0726 963 MobiDBLite consensus disorder prediction 794 816 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1663 Cco-Chr1:29386459 Cco03g0726 Cco-Chr3:7477339 8.80E-77 dispersed
Cco03g0726 Cco-Chr3:7477339 Cco06g0761 Cco-Chr6:8741529 6.10E-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0726 K10746 - csv:101214177 1182.93