Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0733 ATGGACAAGAATCGGAGTGGAGAACGACGAATGGCGGCGTTTTCCTCTTCGGCGGATAGCAATACTAGGGCTCGTCCTAGCACCACCACTAGCACCGACAACAGACTTGCCGCACTTGTCAAATACAATGTCGATGCTGGGCTTTTGAACAAGTTTGAGCTCTCGGATGCATCTGGTGAGTCTTTTAACTATTCCAGATCAGTTCTTGAAGCTCCTGTTTCTGTACCCGAAGAACAAATTACTGCCTATTTGTCTAAGATTCAGAGGGGTGGGTTGGTTCAACCCTTTGGTTGTTTGCTTGCCATTGAAGAATCTAGTTTTAAGATTATTAGTTATAGTGAGAATTGTTTTGAATTATTGGGGCTTAATGATCAATTTGGGTCGGCACAGGGGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCGAAAGCGGCTTTGTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTCCATTCTAGGACTACCCAGAAGCCATTTTATGCTATATTGCATAGAATTGATGTGGGGATTATATTTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCAGGTGCTGTGCAGTCACAGAAACTTGCGGTTCGAGCGATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATTGGTATTCTATGTGATACGGTTGTTGAAGATGTTCAAAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCACAATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTGGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCGTCAGGATGATTTGTGATTGCCATGCGAAGCCTGTGCAGGTCGTTCAAAGTGATGAACTAAAGCAGCCTCTTTGTTTGGTGAATTCAACACTAAGAGCACCATATAGCTGTCATTTGCAATACATGGCAAATATGGGTTCCTTAGCTTCATTAGTGATGGCAGTAATCGTGAATAGTGATGACTCACCAACAAAGCTATGGGGCCTGGTAGTGTGCCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGTGAGTTTCTCACGCAGGCCTTCGGGCTGCAGCTTTACATGGAACTTCAATTGGCATTACAATTAACAGAGAAAAGAATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCCCCATATGCATTGGTGACTCAATCTCCTAGTATAATGGATATTGTGAAGTGCGATGGTGCTGCATTGTACTATAATGGGGCATGTTGTTTATTAGGTGTAACTCCAACCAAAGCACAAGTCAAAGATCTTGCTGAGTGGATACTAAATAACCATGGGGATTCTACGGGGCTAAGCACGGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCTGTGTGTGGTATGGCAGCTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGCTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATTGTGGACGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCATTGCAGCTCATAATGAGGGAGTCTTTTCTGAATGCTAGGGACAGTAATTTAAAGGCAGAACATTCTGTCCAGTTTGGTGATGCTGAGATCCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACTGTTCCAATTTTGGGGGTTGACTCAACTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTAAAAACTGGCGAAGCTTTGGGGAAATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGTGGAAGATTTACTTTCCCGTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAACTGGTAAAGAAAAGTCTAACGTGTATATTGTAGTTAATGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGCTTTGTTGGGCAAGATCTTACATCCGAGAAAGGTGTGATGGATAAATTTATCCGTCTACAGGGAGATTATAAGACTATTGTTGAAAGTCCGAGTCCATTGATTCCTCCAATGTTTGTTTCCGACGAGAATGGTTACTGCTACGAATGGACTGCAGCCATGGAAAAACTTACTGGTTGGAGGAAAAATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTTTGTAGGTTGAAAGGTTTAGATACCCTCACTAGGTTTATGATTCTATTATATCAAGGTATTAGTGGTGAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAACAAGGATGGGAATTATGTAGATGTGTTGTTAACATCGAACAAGAGAACTGATGCCAAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCTACTTACATGGGGTCTTAGAAGGACTTGGGATGGGTGATAGGGAGGGCATTCTGCAGCATAAGGAATTGAGCTTCTTAAAGCATGAGATGAAAAATCCTTTAAATGGCCTTAGATTTACTCATGAACTCCTCGTAAATTCTGGCATTACAGAAAACCAGAAACTCTTCCTTGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGACTTAAGAAGTTTAGAAAGAGGCCAAGTAGAGATAAACAGAGAAGAATTTCTCCTCGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACTTTAACTCTTTGTGGCGATCAAATTAAGCTTCAGATGGTTTTGTCAGATTTCTTACTCAACGCAGTGCAGTATGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCAATTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCCTGAACTAATCCAGGATATGGTTGGAGGAGGACAACGGTTGACTTCAGAGCAAGGCCTGACCCTAAACCTATCACGCAGACTTCTCAATAAACTGAACGGCGCTCAAGGGGGTCGATGGAAGCTACAACAAGCCAAAGGACTTGAGTTTCTCCTCTCAATGAACACTTTTACAAATAGAATTGAGAACCCTTCTCCCAAAGATGCACCGGTTTTCAGCCTGGACAATGCTGAAATCCAGCAGACCCCCATCACGTTCATGTCACCTGACAAATAG 3456 42.33 MDKNRSGERRMAAFSSSADSNTRARPSTTTSTDNRLAALVKYNVDAGLLNKFELSDASGESFNYSRSVLEAPVSVPEEQITAYLSKIQRGGLVQPFGCLLAIEESSFKIISYSENCFELLGLNDQFGSAQGKGLIGVDMRALFTPSSGASLAKAALSREISLLNPVWVHSRTTQKPFYAILHRIDVGIIFDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPSGDIGILCDTVVEDVQKLTGYDRVMVYKFHNDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVVQSDELKQPLCLVNSTLRAPYSCHLQYMANMGSLASLVMAVIVNSDDSPTKLWGLVVCHHTSPRYVPFPLRYACEFLTQAFGLQLYMELQLALQLTEKRILKTQTLLCDMLLRGSPYALVTQSPSIMDIVKCDGAALYYNGACCLLGVTPTKAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAARITSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDCGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIHSLQLIMRESFLNARDSNLKAEHSVQFGDAEIQDINELSSVACEMVRLIETATVPILGVDSTGLINGWNAKISELVGLKTGEALGKSLVNEIVHEDSRGTVEDLLSRALQGKEDKNVELKLRSFGTGKEKSNVYIVVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTIVESPSPLIPPMFVSDENGYCYEWTAAMEKLTGWRKNEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGEVTEKFPLGFFNKDGNYVDVLLTSNKRTDAKGNAIGCICFLQIVQPYLHGVLEGLGMGDREGILQHKELSFLKHEMKNPLNGLRFTHELLVNSGITENQKLFLDTSDACERQIMTIIEDMDLRSLERGQVEINREEFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNAVQYAPVLDGWVEIKISSGLKLIQDGNEHIQLQIRMSHPGQGLPPELIQDMVGGGQRLTSEQGLTLNLSRRLLNKLNGAQGGRWKLQQAKGLEFLLSMNTFTNRIENPSPKDAPVFSLDNAEIQQTPITFMSPDK 1151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7535591 7541015 - CcPI632755_03g007330.1 Cco03g0733 174092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0733 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 866 IPR035965 -
Cco03g0733 1151 Gene3D PAS domain 762 871 - -
Cco03g0733 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cco03g0733 1151 MobiDBLite consensus disorder prediction 10 31 - -
Cco03g0733 1151 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Cco03g0733 1151 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cco03g0733 1151 SMART HisKA_10 889 953 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco03g0733 1151 Pfam Phytochrome region 412 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 Pfam PAS fold 748 867 IPR013767 GO:0006355(InterPro)
Cco03g0733 1151 Pfam PAS fold 617 731 IPR013767 GO:0006355(InterPro)
Cco03g0733 1151 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Cco03g0733 1151 SMART pas_2 747 817 IPR000014 -
Cco03g0733 1151 SMART pas_2 616 683 IPR000014 -
Cco03g0733 1151 CDD HisKA 894 949 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco03g0733 1151 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Cco03g0733 1151 Gene3D - 931 1110 IPR036890 -
Cco03g0733 1151 Pfam GAF domain 232 395 IPR003018 GO:0005515(InterPro)
Cco03g0733 1151 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1094 IPR003594 -
Cco03g0733 1151 ProSiteProfiles PAS repeat profile. 745 800 IPR000014 -
Cco03g0733 1151 Gene3D - 404 577 IPR043150 -
Cco03g0733 1151 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco03g0733 1151 MobiDBLite consensus disorder prediction 1 31 - -
Cco03g0733 1151 SUPERFAMILY GAF domain-like 407 586 - -
Cco03g0733 1151 PANTHER OS08G0260000 PROTEIN 16 993 - -
Cco03g0733 1151 FunFam Phytochrome 404 534 - -
Cco03g0733 1151 SUPERFAMILY GAF domain-like 208 395 - -
Cco03g0733 1151 CDD PAS 625 732 IPR000014 -
Cco03g0733 1151 Pfam His Kinase A (phospho-acceptor) domain 893 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco03g0733 1151 ProSiteProfiles Histidine kinase domain profile. 896 1118 IPR005467 -
Cco03g0733 1151 Gene3D - 209 560 IPR029016 -
Cco03g0733 1151 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1095 IPR036890 -
Cco03g0733 1151 NCBIfam PAS domain S-box protein 621 736 IPR000014 -
Cco03g0733 1151 Pfam PAS fold 82 195 IPR013654 GO:0006355(InterPro)
Cco03g0733 1151 SMART gaf_1 228 409 IPR003018 GO:0005515(InterPro)
Cco03g0733 1151 Gene3D PAS domain 86 331 - -
Cco03g0733 1151 CDD PAS 759 867 IPR000014 -
Cco03g0733 1151 PIRSF Phytochrome_conventional 14 1121 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cco03g0733 1151 Gene3D PAS domain 615 736 - -
Cco03g0733 1151 FunFam Phytochrome 610 742 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0733 Cco-Chr3:7535591 Cco05g0775 Cco-Chr5:6464507 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0733 K12123 - csv:101214900 1994.93