Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0744 | ATGCGATGTTCTTACTGTACAAAGCACTTCTTCCAGCGGTTTTTCACGGATGAGTTCCAAATCAACGGCGGCGGAGGCGGCGGCGGCGCTCTTCAAAGCACTTTTTTGTCTCCTGAGCTTTTGCCTTCTCTTGGAGCCAGTATTAACCAAACCACCACCCTTCGTAAACACATCATTTCCCCTTTTGACCCTCGTTATCGAGCATGGGAGATGTGGCTAGTGGTTCTAGTGATATACTCAGCTTGGATTTGTCCATTTGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATAGATCACTTTGTGAATGCCTTCTTTGCGATCGATATCATTTTAACTTTCTTCGTCGCATATCTCGACTCCCAATCCTATCTTCTCATTGACCACCCCAAAAAGATTGCACTAAGGTATTTATCTACTTGGTTTATATTCGACGTTTGTTCTACTGCGCCATTACAATCAATCAGTTTCTTGTTCACAAATCAAAGTGGAGAAGTTGGGTTTAAGCTTCTCAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCGTTTCTGTTACATTATTTGCAGTACATTGTGCTGGGTGCTTCAATTATGTAATAGCAGATAAATATCCAGAGTCAAAACAAACATGGATTGGTGCAGTTAACCCAAATTTCAAAGAAGATAGTGTATGGAACCTTTATATTACTTCACTTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTGTTTGATATCTTTTATATGCTCTTCAATTTGGGCTTCACTTCCTATCTCATCGGTAACATGACTAATCTCGTTGTCCACTGGACCAGTCGCACTCGAAACTTCAGAGATTCGGTGCAAGCTGCGACGGAGTTCGCATTGAGAAACCAGTTACCGGAACGGATACACGACCAGATGTTGTCACACATATGTCTCAAGTTCAGAACTGAGGGGTTGAAGCAACAAGACACATTGAATGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTCTTCAAAAGGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGACATTATACTTCAAAATGAGGCTCAAACAGATCTCTATATATTAGTCTCAGGCAGTGTGGATCTAATATTATCCAATAATGAAGATGGGCAGGATGAGCAAGTTATAGGAGGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTTTTATGTCAAAAGCCACAGCCTTTCACAATTAGAACCACAAAGCTTTCTCAAATATTAAGGCTCAAGAGAACTTCTTTGTTGTATATTCTTCAATCAAACACAGAAGATGGGAATATTATAATGAACAACTTTTTCATGAAAGTGAAGGAATATGAAAGAATTAAGGGGAATATTTGGTGTGATAATGGCGAGCTATTAAAGAAAGTTGACAATTATTCTAAAGAGGATGATGAAAATTATGTGGGAAATAATAATAATAATTTAGATGAACATAGAATTGAGTTTGATGAAGAGGTTGAAGGGGGTGAAAAGGAAATTATTAAATTTTCTCATAACAACAAATTACAAGGAAGAAATAATGGAGGTCAACCTTCATTAGAAAATTTCACAACAATTAGCTCTAATTACTTGAATAATGTCTCTAGACAAATCAAGAAAAGGGTTACAGTATATATGCAGCATCCTCAAGATAGAAGCAAGGTTAAAAGTCAATATGGGAAGTTGATGCTTCTCCCCAATTCGATCGAAGAGCTCTGCAAAATCGCTGGTGAAAAGTTTGGAGGGCAAATGCCTACGAAAGTGATGAGTGCGGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAGTGATATTGAAAATTGTGGTCTTCAATGA | 2061 | 39.11 | MRCSYCTKHFFQRFFTDEFQINGGGGGGGALQSTFLSPELLPSLGASINQTTTLRKHIISPFDPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAIDIILTFFVAYLDSQSYLLIDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVSVTLFAVHCAGCFNYVIADKYPESKQTWIGAVNPNFKEDSVWNLYITSLYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVQAATEFALRNQLPERIHDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPILQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSNNEDGQDEQVIGGATAGEMFGEFGVLCQKPQPFTIRTTKLSQILRLKRTSLLYILQSNTEDGNIIMNNFFMKVKEYERIKGNIWCDNGELLKKVDNYSKEDDENYVGNNNNNLDEHRIEFDEEVEGGEKEIIKFSHNNKLQGRNNGGQPSLENFTTISSNYLNNVSRQIKKRVTVYMQHPQDRSKVKSQYGKLMLLPNSIEELCKIAGEKFGGQMPTKVMSADNAEIDDINVIRDGDHLFLLYSDIENCGLQ | 686 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 7693331 | 7700353 | + | CcPI632755_03g007440.1 | Cco03g0744 | 174103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0744 | 686 | Pfam | Cyclic nucleotide-binding domain | 403 | 492 | IPR000595 | - | |
| Cco03g0744 | 686 | Pfam | Ion transport protein | 66 | 313 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco03g0744 | 686 | Gene3D | - | 67 | 307 | - | - | |
| Cco03g0744 | 686 | PRINTS | EAG/ELK/ERG potassium channel family signature | 254 | 271 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco03g0744 | 686 | PRINTS | EAG/ELK/ERG potassium channel family signature | 298 | 307 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco03g0744 | 686 | PRINTS | EAG/ELK/ERG potassium channel family signature | 280 | 291 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco03g0744 | 686 | PRINTS | EAG/ELK/ERG potassium channel family signature | 102 | 112 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco03g0744 | 686 | PRINTS | EAG/ELK/ERG potassium channel family signature | 79 | 86 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco03g0744 | 686 | PRINTS | EAG/ELK/ERG potassium channel family signature | 113 | 122 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco03g0744 | 686 | ProSiteProfiles | KHA domain profile. | 606 | 686 | IPR021789 | - | |
| Cco03g0744 | 686 | FunFam | Potassium channel KAT3 | 68 | 308 | - | - | |
| Cco03g0744 | 686 | CDD | CAP_ED | 384 | 500 | IPR000595 | - | |
| Cco03g0744 | 686 | PANTHER | POTASSIUM CHANNEL AKT1 | 17 | 540 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cco03g0744 | 686 | SUPERFAMILY | cAMP-binding domain-like | 311 | 503 | IPR018490 | - | |
| Cco03g0744 | 686 | FunFam | Potassium channel KAT2 | 372 | 511 | - | - | |
| Cco03g0744 | 686 | Gene3D | Jelly Rolls | 351 | 516 | IPR014710 | - | |
| Cco03g0744 | 686 | SMART | cnmp_10 | 384 | 504 | IPR000595 | - | |
| Cco03g0744 | 686 | Pfam | KHA, dimerisation domain of potassium ion channel | 605 | 675 | IPR021789 | - | |
| Cco03g0744 | 686 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 384 | 506 | IPR000595 | - | |
| Cco03g0744 | 686 | SUPERFAMILY | Voltage-gated potassium channels | 61 | 307 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0744 | Cco-Chr3:7693331 | Cco06g1242 | Cco-Chr6:22383764 | 5.10E-07 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0744 | K21867 | - | csv:101215858 | 1163.29 |