Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0744 ATGCGATGTTCTTACTGTACAAAGCACTTCTTCCAGCGGTTTTTCACGGATGAGTTCCAAATCAACGGCGGCGGAGGCGGCGGCGGCGCTCTTCAAAGCACTTTTTTGTCTCCTGAGCTTTTGCCTTCTCTTGGAGCCAGTATTAACCAAACCACCACCCTTCGTAAACACATCATTTCCCCTTTTGACCCTCGTTATCGAGCATGGGAGATGTGGCTAGTGGTTCTAGTGATATACTCAGCTTGGATTTGTCCATTTGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATAGATCACTTTGTGAATGCCTTCTTTGCGATCGATATCATTTTAACTTTCTTCGTCGCATATCTCGACTCCCAATCCTATCTTCTCATTGACCACCCCAAAAAGATTGCACTAAGGTATTTATCTACTTGGTTTATATTCGACGTTTGTTCTACTGCGCCATTACAATCAATCAGTTTCTTGTTCACAAATCAAAGTGGAGAAGTTGGGTTTAAGCTTCTCAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCGTTTCTGTTACATTATTTGCAGTACATTGTGCTGGGTGCTTCAATTATGTAATAGCAGATAAATATCCAGAGTCAAAACAAACATGGATTGGTGCAGTTAACCCAAATTTCAAAGAAGATAGTGTATGGAACCTTTATATTACTTCACTTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTGTTTGATATCTTTTATATGCTCTTCAATTTGGGCTTCACTTCCTATCTCATCGGTAACATGACTAATCTCGTTGTCCACTGGACCAGTCGCACTCGAAACTTCAGAGATTCGGTGCAAGCTGCGACGGAGTTCGCATTGAGAAACCAGTTACCGGAACGGATACACGACCAGATGTTGTCACACATATGTCTCAAGTTCAGAACTGAGGGGTTGAAGCAACAAGACACATTGAATGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTCTTCAAAAGGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGACATTATACTTCAAAATGAGGCTCAAACAGATCTCTATATATTAGTCTCAGGCAGTGTGGATCTAATATTATCCAATAATGAAGATGGGCAGGATGAGCAAGTTATAGGAGGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTTTTATGTCAAAAGCCACAGCCTTTCACAATTAGAACCACAAAGCTTTCTCAAATATTAAGGCTCAAGAGAACTTCTTTGTTGTATATTCTTCAATCAAACACAGAAGATGGGAATATTATAATGAACAACTTTTTCATGAAAGTGAAGGAATATGAAAGAATTAAGGGGAATATTTGGTGTGATAATGGCGAGCTATTAAAGAAAGTTGACAATTATTCTAAAGAGGATGATGAAAATTATGTGGGAAATAATAATAATAATTTAGATGAACATAGAATTGAGTTTGATGAAGAGGTTGAAGGGGGTGAAAAGGAAATTATTAAATTTTCTCATAACAACAAATTACAAGGAAGAAATAATGGAGGTCAACCTTCATTAGAAAATTTCACAACAATTAGCTCTAATTACTTGAATAATGTCTCTAGACAAATCAAGAAAAGGGTTACAGTATATATGCAGCATCCTCAAGATAGAAGCAAGGTTAAAAGTCAATATGGGAAGTTGATGCTTCTCCCCAATTCGATCGAAGAGCTCTGCAAAATCGCTGGTGAAAAGTTTGGAGGGCAAATGCCTACGAAAGTGATGAGTGCGGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAGTGATATTGAAAATTGTGGTCTTCAATGA 2061 39.11 MRCSYCTKHFFQRFFTDEFQINGGGGGGGALQSTFLSPELLPSLGASINQTTTLRKHIISPFDPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAIDIILTFFVAYLDSQSYLLIDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLVSVTLFAVHCAGCFNYVIADKYPESKQTWIGAVNPNFKEDSVWNLYITSLYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVQAATEFALRNQLPERIHDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPILQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSNNEDGQDEQVIGGATAGEMFGEFGVLCQKPQPFTIRTTKLSQILRLKRTSLLYILQSNTEDGNIIMNNFFMKVKEYERIKGNIWCDNGELLKKVDNYSKEDDENYVGNNNNNLDEHRIEFDEEVEGGEKEIIKFSHNNKLQGRNNGGQPSLENFTTISSNYLNNVSRQIKKRVTVYMQHPQDRSKVKSQYGKLMLLPNSIEELCKIAGEKFGGQMPTKVMSADNAEIDDINVIRDGDHLFLLYSDIENCGLQ 686
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 7693331 7700353 + CcPI632755_03g007440.1 Cco03g0744 174103
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0744 686 Pfam Cyclic nucleotide-binding domain 403 492 IPR000595 -
Cco03g0744 686 Pfam Ion transport protein 66 313 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0744 686 Gene3D - 67 307 - -
Cco03g0744 686 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0744 686 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0744 686 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0744 686 PRINTS EAG/ELK/ERG potassium channel family signature 102 112 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0744 686 PRINTS EAG/ELK/ERG potassium channel family signature 79 86 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0744 686 PRINTS EAG/ELK/ERG potassium channel family signature 113 122 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0744 686 ProSiteProfiles KHA domain profile. 606 686 IPR021789 -
Cco03g0744 686 FunFam Potassium channel KAT3 68 308 - -
Cco03g0744 686 CDD CAP_ED 384 500 IPR000595 -
Cco03g0744 686 PANTHER POTASSIUM CHANNEL AKT1 17 540 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cco03g0744 686 SUPERFAMILY cAMP-binding domain-like 311 503 IPR018490 -
Cco03g0744 686 FunFam Potassium channel KAT2 372 511 - -
Cco03g0744 686 Gene3D Jelly Rolls 351 516 IPR014710 -
Cco03g0744 686 SMART cnmp_10 384 504 IPR000595 -
Cco03g0744 686 Pfam KHA, dimerisation domain of potassium ion channel 605 675 IPR021789 -
Cco03g0744 686 ProSiteProfiles cAMP/cGMP binding motif profile. 384 506 IPR000595 -
Cco03g0744 686 SUPERFAMILY Voltage-gated potassium channels 61 307 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0744 Cco-Chr3:7693331 Cco06g1242 Cco-Chr6:22383764 5.10E-07 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0744 K21867 - csv:101215858 1163.29