Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0753 ATGGCGGCCTCAACAATGGCTCTGTCCTCGCCCTCACTCGCCGGAAAGGCGGTGAAACTTACGCCCTCCTCCCCTGAGCTTCTCGGCAATGGCAGAGTCAGTATGAGGAAATCCGCTGCCAAGCCTGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGGCCATTCTCCGGCGAGCCTCCGTCCTACCTCACCGGAGAATTCCCCGGTGACTATGGCTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCTAAGAACCGTGAGCTTGAAGTCATCCACTCTAGGTGGGCCATGCTCGGAGCGTTGGGCTGCGTGTTCCCGGAGCTTCTTTCCCGCAACGGCGTGAAGTTTGGAGAAGCAGTGTGGTTCAAGGCGGGTTCACAAATCTTCAGCGAAGGTGGGCTGGACTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCTCAGGTGGTTCTCATGGGGGCAGTCGAGGGATACCGTATCGCCGGTGGCCCACTTGGGGAAGTGACCGACCCGATTTACCCGGGTGGGAGCTTTGACCCGTTGGGGCTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGAAGATTGGCGATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGCCCACTTGAGAATCTTGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCTACCAACTTTGTTCCTGGAAAATGA 798 56.27 MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSAAKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7801593 7803777 - CcPI632755_03g007530.1 Cco03g0753 174112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0753 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cco03g0753 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cco03g0753 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cco03g0753 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cco03g0753 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1970 Cco-Chr2:32643188 Cco03g0753 Cco-Chr3:7801593 3.40E-145 dispersed
Cco03g0753 Cco-Chr3:7801593 Cco04g2218 Cco-Chr4:35799355 8.70E-149 dispersed
Cco03g0753 Cco-Chr3:7801593 Cco03g0754 Cco-Chr3:7807338 1.10E-13 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0753 K08912 - rcu:8289767 526.554