Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0793 ATGGACGGCAGCGCTGGGAGGTCGAAGGCGTTGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGAAAATACCAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCCGAGACCGGCGAGAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGAATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTAATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCTTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATTTTCAATGAAACAGGGGATTCGGGTAGTCTCGTCGTGGAAAGAAAAGAGGAAGGATCTAAAGCCCCTCTTGCAATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAGCGGGAAACCAGGTTCACATCCAATCGACCTGCCAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTTGCAACAGAGATTTACGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACGTTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCCGGACGAAGGAGATAGTGGTGCAAGTGTCTCGCAGTCGAGGTCGAGAAGGTGTTGTACTGCTTTGGATGCAGAAAAAAGAATTGGGCTGCTGTCTTGGCAAGGTTCACCTGAAATTTTTGTTTTGATAACTGGGAGTTGGAGTTTTGGTCTCCTATATCTAAGGACACCTGTGCCCGCCACAAGGCTCGAACCCGTTAGACATGAAGTTGATGCCTTAATCTTGTACCGAGTTTTGGAGCTTGATGTTGCAAATGTGGTGCGTTTCTTCTTGGAAGTCTATGATATGCAATATGCTCTTAGGAATATGCATAACCCTGATGTGCTTCTTTTAGTGTTGGTGCATATTGGCCAATTTGCATCAAAGAAAGCCTAA 1725 42.9 MDGSAGRSKALSSSNGGRTRVGKYQLGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDPDEGDSGASVSQSRSRRCCTALDAEKRIGLLSWQGSPEIFVLITGSWSFGLLYLRTPVPATRLEPVRHEVDALILYRVLELDVANVVRFFLEVYDMQYALRNMHNPDVLLLVLVHIGQFASKKA 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8354474 8363980 + CcPI632755_03g007930.1 Cco03g0793 174152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0793 574 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0793 574 Gene3D Kinase associated domain 1, KA1 320 446 - -
Cco03g0793 574 CDD STKc_SnRK3 23 278 - -
Cco03g0793 574 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Cco03g0793 574 CDD CIPK_C 327 442 - -
Cco03g0793 574 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco03g0793 574 SUPERFAMILY Protein kinase-like (PK-like) 21 289 IPR011009 -
Cco03g0793 574 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
Cco03g0793 574 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0793 574 MobiDBLite consensus disorder prediction 1 23 - -
Cco03g0793 574 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Cco03g0793 574 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0793 574 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Cco03g0793 574 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Cco03g0793 574 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Cco03g0793 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0793 574 FunFam Non-specific serine/threonine protein kinase 320 446 - -
Cco03g0793 574 FunFam Non-specific serine/threonine protein kinase 17 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2566 Cco-Chr2:37969250 Cco03g0793 Cco-Chr3:8354474 3.40E-182 dispersed
Cco03g0793 Cco-Chr3:8354474 Cco08g1342 Cco-Chr8:25286084 2.20E-149 dispersed
Cco05g0063 Cco-Chr5:584971 Cco03g0793 Cco-Chr3:8354474 8.60E-175 transposed
Cco03g0793 Cco-Chr3:8354474 Cco04g2264 Cco-Chr4:36186438 4.90E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86669 PF00069 Pkinase 1.30E-74 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0793 - - - 0.0