Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0793 | ATGGACGGCAGCGCTGGGAGGTCGAAGGCGTTGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGAAAATACCAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCCGAGACCGGCGAGAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGAATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTAATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCTTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATTTTCAATGAAACAGGGGATTCGGGTAGTCTCGTCGTGGAAAGAAAAGAGGAAGGATCTAAAGCCCCTCTTGCAATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAGCGGGAAACCAGGTTCACATCCAATCGACCTGCCAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTTGCAACAGAGATTTACGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACGTTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCCGGACGAAGGAGATAGTGGTGCAAGTGTCTCGCAGTCGAGGTCGAGAAGGTGTTGTACTGCTTTGGATGCAGAAAAAAGAATTGGGCTGCTGTCTTGGCAAGGTTCACCTGAAATTTTTGTTTTGATAACTGGGAGTTGGAGTTTTGGTCTCCTATATCTAAGGACACCTGTGCCCGCCACAAGGCTCGAACCCGTTAGACATGAAGTTGATGCCTTAATCTTGTACCGAGTTTTGGAGCTTGATGTTGCAAATGTGGTGCGTTTCTTCTTGGAAGTCTATGATATGCAATATGCTCTTAGGAATATGCATAACCCTGATGTGCTTCTTTTAGTGTTGGTGCATATTGGCCAATTTGCATCAAAGAAAGCCTAA | 1725 | 42.9 | MDGSAGRSKALSSSNGGRTRVGKYQLGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDPDEGDSGASVSQSRSRRCCTALDAEKRIGLLSWQGSPEIFVLITGSWSFGLLYLRTPVPATRLEPVRHEVDALILYRVLELDVANVVRFFLEVYDMQYALRNMHNPDVLLLVLVHIGQFASKKA | 574 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8354474 | 8363980 | + | CcPI632755_03g007930.1 | Cco03g0793 | 174152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0793 | 574 | SMART | serkin_6 | 24 | 279 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0793 | 574 | Gene3D | Kinase associated domain 1, KA1 | 320 | 446 | - | - | |
Cco03g0793 | 574 | CDD | STKc_SnRK3 | 23 | 278 | - | - | |
Cco03g0793 | 574 | FunFam | Non-specific serine/threonine protein kinase | 15 | 103 | - | - | |
Cco03g0793 | 574 | CDD | CIPK_C | 327 | 442 | - | - | |
Cco03g0793 | 574 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 12 | 434 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco03g0793 | 574 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 289 | IPR011009 | - | |
Cco03g0793 | 574 | Pfam | NAF domain | 323 | 383 | IPR004041 | GO:0007165(InterPro) | |
Cco03g0793 | 574 | ProSiteProfiles | Protein kinase domain profile. | 24 | 279 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0793 | 574 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cco03g0793 | 574 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 286 | - | - | |
Cco03g0793 | 574 | Pfam | Protein kinase domain | 24 | 279 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0793 | 574 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 103 | - | - | |
Cco03g0793 | 574 | ProSiteProfiles | NAF domain profile. | 321 | 345 | IPR018451 | GO:0007165(InterPro) | |
Cco03g0793 | 574 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524(InterPro) | |
Cco03g0793 | 574 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0793 | 574 | FunFam | Non-specific serine/threonine protein kinase | 320 | 446 | - | - | |
Cco03g0793 | 574 | FunFam | Non-specific serine/threonine protein kinase | 17 | 321 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2566 | Cco-Chr2:37969250 | Cco03g0793 | Cco-Chr3:8354474 | 3.40E-182 | dispersed | |
Cco03g0793 | Cco-Chr3:8354474 | Cco08g1342 | Cco-Chr8:25286084 | 2.20E-149 | dispersed | |
Cco05g0063 | Cco-Chr5:584971 | Cco03g0793 | Cco-Chr3:8354474 | 8.60E-175 | transposed | |
Cco03g0793 | Cco-Chr3:8354474 | Cco04g2264 | Cco-Chr4:36186438 | 4.90E-213 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86669 | PF00069 | Pkinase | 1.30E-74 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0793 | - | - | - | 0.0 |