Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0807 ATGTTGGAACACCTCGCCCGAGAATCAGACGGGGAGCTTGGTTACGAAGCAGCTGTTAATTCGAATTCCAGTCAAAATTCTATGAGCAGTGAGAGTTGTAGTAGTTTCAGTCGTCTCTCCTTTGATGCTGCCATTGATTTACCTACCTCTCGATCTTCACCGGAGAGTCTTGATTTGAAGCCTCATCGATCGTCTGATTTCGCTTACTCCGCTATTCGTCGACGGAAATCTAAGCTTACGTTTCGTGATTTTCGACTTCTCCGTCGGATTGGTGCTGGCGACATTGGGACTGTTTATTTATGTCAGTTGAGGAAGCTGAGCGAGGGGTGTTATGAGGAGGAAGATGATGATCCATGTTTCTATGCGATGAAAGTCGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAAGTGCAGAGGGCGGAAATGGAGAGGAGAATATTGAAGATGCTGGATCATCCGTTTTTGCCTACACTCTACGCTGAGTTTGAGGCTTCTCATTTCTCTTGTATTGTTATGGAGTTCTGTTCCGGCGGCGATTTGCATTCTCTCCGCCATAAACAGCCGCGGAAACGCTTCTCTCTCACTTCCGCGAGGTTTTATGCAGCTGAAGTTCTTGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTACAGAGACCTTAAACCGGAGAATGTTCTCGTCCGATCAGACGGTCACATTATGTTGTCGGATTTCGATTTATCTCTCTGTTCCGACGCCACCCCTGCCGTAGAATCACCCAACTCCTCCCCTAACACGGCGTTTCCCGACGCAACGGCCTACCCCAGAACCAACGCTGCCGTTTCCGCCGCCTCCACAACTCCTTTTTCCTGCCTCTACAACCGCCTTTTCCGGTCGCGCAAGGTCCAAACTCTGACCCCCAACTGGCTCTTTGTCGCAGAGCCCGTTTCCGCTCGGTCCTGCTCTTTTGTCGGTACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGCGGGTCCCACGGTAACGCCGTTGACTGGTGGGCCTTTGGAATATTTCTCTACGAGTTGATCTACGGGCGCACGCCGTTTGCGGCTTCGTCCAACGAGACGACGCTAAGGAACATTATAAAGAAGCCGTTGACGTTTCCGACTGCGGTGCCGTCTGGCGCGCTTGAGCACCACGCGCGGGACCTCATATCCGGATTGCTTAACAAGGATCCGACCCGGAGACTTGGGTCGAAACGCGGGTCCGCCGACATCAAGAAGCATCCGTTCTTCAAGGGGCTCAACTTCGCCTTAATTCGGTCACTCACTCCGCCGGAAATTCCCGGCGTACGACGGCGGAAGCAGATTCCCGTTCCGGCGGCCAAGAGCAAGGACAAGCCGGGTCAGTCAGCCGGGTTCGATTACTTCTGA 1398 52.29 MLEHLARESDGELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDLPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRKLSEGCYEEEDDDPCFYAMKVVDKEALELKKKVQRAEMERRILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLTSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPNTAFPDATAYPRTNAAVSAASTTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTAVPSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEIPGVRRRKQIPVPAAKSKDKPGQSAGFDYF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8685812 8687801 - CcPI632755_03g008070.1 Cco03g0807 174166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0807 465 ProSiteProfiles Protein kinase domain profile. 84 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0807 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0807 465 FunFam serine/threonine-protein kinase D6PK-like 312 438 - -
Cco03g0807 465 Gene3D Phosphorylase Kinase; domain 1 82 174 - -
Cco03g0807 465 CDD STKc_phototropin_like 82 443 - -
Cco03g0807 465 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Cco03g0807 465 FunFam protein kinase PINOID 175 243 - -
Cco03g0807 465 PANTHER FLIPPASE KINASE 1-RELATED 30 442 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco03g0807 465 Coils Coil 123 150 - -
Cco03g0807 465 FunFam protein kinase PINOID 2 82 174 - -
Cco03g0807 465 Gene3D Transferase(Phosphotransferase) domain 1 313 438 - -
Cco03g0807 465 SUPERFAMILY Protein kinase-like (PK-like) 63 435 IPR011009 -
Cco03g0807 465 MobiDBLite consensus disorder prediction 439 465 - -
Cco03g0807 465 Pfam Protein kinase domain 314 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0807 465 Pfam Protein kinase domain 85 246 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0807 465 SMART serkin_6 84 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0807 Cco-Chr3:8685812 Cco11g0307 Cco-Chr11:3089334 1.20E-108 dispersed
Cco03g0807 Cco-Chr3:8685812 Cco01g1229 Cco-Chr1:18768052 2.60E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86670 PF00069 Pkinase 1.20E-31 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0807 - - - 0.0