Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0818 ATGGATAATGGTGATATTGAGAGCGGGGAAGAGGAATTTCATGGGCAGAGGGGTAGGAAGTATCGCCCTGTCGAAGCCCATGATCGTGCTGTTCTTGAAATGTCTTCCATGGATCCGGGTTCCTCATCTTCTTCCTCCTCCATTCCCCCCTTGCGCCAACCTTCTCTCAAGAAGGTAAAAGTGGGTTCTCAGACCGGCACTGAAAAAGAAGGGAATTCTCCTACTCGTATTGAAGTCAATGGCCCTCAGCGAGAATCCAAACTGGAGTTTTTTGGTTTTGATTCTCTTGTTAATATTCTTGGCCTTAAGAGTATGATGGGCGAACAAATTCAAGCACCTTCTAGTCCTCGAGATGGTGAGAATGTTTCTATCACTCAGGGGTTGCCAAAGACCAATGAAGTCAAATCGGGTACATTGATGGGTGTATTTATCCCATGCTTGCAGAACATATTGGGAATCATTTACTATATTCGATTTTCTTGGATTGTTGGCATGGCTGGCATTGGTGAGTCATTAGTGCTGGTGGCGTTTTGTGGTTTATGTACGTTCTTGACTTCAATTTCACTAAGTGCTATTGCAACTAATGGAGCTATGAAGGGTGGGGGTCCATATTATCTGATAGGTCGTGCCCTTGGTCCAGAGGTTGGAGTTAGCATTGGGCTATGTTTCTTTCTTGGAAATGCAGTTGCTGGTGCGCTTTATGTGTTGGGAGCTGTGGAAACATTTTTGAATGCTGTCCCAGCTGCAGGGATTTTCAGAGAGACTGTAACAAAAGTTAACGGAACAACTGTTGCAGAGCCAATACAAAGCCCAAGTTCACATGACTTGCAAGTTTATGGCATTATTGTGACGATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAATAGGGTTGCTCCTGCTTTCCTTATTCCAGTCTTGTTCTCAGTACTTTGCATATTTCTTGGAATTTTTCTGGCAAGGAAAAACGACCCAGCAGAGGGCGTCACAGGTTTGAGTTTGGAATCTTTTAAAGAAAATTGGAGTTCTGATTATCAGATGACTAATAGTGCTGGAATTCCTGATCCTTTTGGAAAAGTATACTGGAATTTCAATGCTTTGGTTGGTCTTTTTTTCCCTGCTGTGACGGGAATAATGGCTGGTTCTAATAGATCGGCTTCACTGAAGGATACTCAGCGTTCAATTCCTATTGGAACATTGGCTGCAACTCTAACAACAACTGCATTGTATCTGATCTCTGTTTTGCTGTTTGGAGCACTGGCAACCAGAGAGAAATTGTTGACAGATAGGCTTCTTACTGCTACGGTTGCTTGGCCTTTCCCAGCAATTATTTACGTTGGAATTATTTTATCAACCCTTGGAGCTGCCCTTCAGAGCCTGACAGGAGCCCCTCGCTTACTAGCAGCCATAGCCAATGATGATATATTGCCTATTCTAAACTATTTTAAAGTAGCAGATGGCAGTGAGCCATACTTTGCAACCCTCTTTACTGCATTTCTCTGCATTGGATGTGTCATTATTGGGAATCTTGATCTTATCACACCAACTGTAACCATGTTTTTCCTACTGTGTTATGCTGGTGTGAACTTATCCTGCTTCCTTTTGGATCTACTAGACGCTCCCAGTTGGCGTCCACGCTGGAGATTCCACCACTGGAGCCTTTCTCTTCTTGGAGCATCACTTTGTGTAGTGATAATGTTCTTGATCTCGTGGTCATTCACGATAGTGTCTCTAGCCCTTGCAAGCCTTATATATTATTATGTGTGCCTTAGAGGCAAGGCTGGAGACTGGGGTGATGGTTTCAAGAGTGCATATTTCCAACTTGCTCTCCGTAGTCTTCGTTCGCTTGGAGCGAGCCAAGTCCACCCAAAGAACTGGTATCCCATTCCCTTGATATTTTGCCGGCCATGGGGAAAACTGCCCGAAAATGTACCATGTCACCCTAAACTTGCAGACTTTGCAAACTGCATGAAGAAAAAAGGCCGGGGAATGTCCATATTTGTCTCTATACTAGATGGAGACTACCATGAACGGGTTGAAGATGCAAAAGCTGCCTGCAAGCAGCTTGCTACATATATCGATTACAAACGTTGTGAAGGTGTGGCAGAGATTGTTGTGGCTCCAACAATGTCTGAAGGTTTCCGGGGGATCGTTCAGACGATGGGTCTTGGAAATCTCAAGCCGAATATTGTAGTCATGCGATACCCTGAAATATGGCGTCGTGAAAACCTAATAGAAATTCCAGCTACTTTTGTTGGAATAATCAATGACTGCATTGATGCCAACAAGGCAGTTGTCATTGTTAAGGGTCTGGATGAATGGCCTAATGAATTTCAAAGGCAATATGGAACTATAGACTTGTATTGGATTGTGAGAGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTTCTCCTTACAAAGGAGAGCTTTGAGAGTTGTAAGATTCAGGTGTTCTGCATTGCAGAGGAGGATTCTGACGCGGAGGGCCTCAAAGCTGATGTCAAAAAGTTTTTGTATGATCTTCGGATGCAAGCTGAGGTGATTGTTATAACAATAAAATCATGGGACACACAAGTGGAGGGCGCGCAACCAGACGAATCAATGGAAGCCTTCAGCGCTGCTCAAGGGAGGATTGCTAGTTATTTAAGTGAAATGAAGGCAACAGCTGAGAGCAGAGGAACCACACTCATGGCTGATGGGAAGCCTGTGAGTGTGAATGAGCAGCAGGTTGAGAAGTTTCTAAATACAACTCTCAAGTTGAACTCAACGATTCTGAGATACTCCAGGATGGCTGCGGTTGTGCTCGTCAGCCTCCCGCCACCCCCTGTCAACCATCCTGCTTACTTCTATATGGAGTACTTGGATTTGTTGGTTGAGAATGTGCCTAGGCTCTTGATCGTAAGAGGATACCGACGAGATGTCGTAACTTTGTTCACCTAG 2949 44.29 MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGSSSSSSSIPPLRQPSLKKVKVGSQTGTEKEGNSPTRIEVNGPQRESKLEFFGFDSLVNILGLKSMMGEQIQAPSSPRDGENVSITQGLPKTNEVKSGTLMGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPAAGIFRETVTKVNGTTVAEPIQSPSSHDLQVYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLFSVLCIFLGIFLARKNDPAEGVTGLSLESFKENWSSDYQMTNSAGIPDPFGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYLISVLLFGALATREKLLTDRLLTATVAWPFPAIIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPYFATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWRFHHWSLSLLGASLCVVIMFLISWSFTIVSLALASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDAKAACKQLATYIDYKRCEGVAEIVVAPTMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLIEIPATFVGIINDCIDANKAVVIVKGLDEWPNEFQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVITIKSWDTQVEGAQPDESMEAFSAAQGRIASYLSEMKATAESRGTTLMADGKPVSVNEQQVEKFLNTTLKLNSTILRYSRMAAVVLVSLPPPPVNHPAYFYMEYLDLLVENVPRLLIVRGYRRDVVTLFT 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8923200 8936041 + CcPI632755_03g008180.1 Cco03g0818 174177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0818 982 Gene3D Amino acid/polyamine transporter I 134 599 - -
Cco03g0818 982 MobiDBLite consensus disorder prediction 8 32 - -
Cco03g0818 982 MobiDBLite consensus disorder prediction 1 81 - -
Cco03g0818 982 FunFam Cation-chloride cotransporter 1 135 599 - -
Cco03g0818 982 MobiDBLite consensus disorder prediction 36 80 - -
Cco03g0818 982 NCBIfam K-Cl cotransporter 68 982 IPR004842 GO:0006811(InterPro)|GO:0015377(InterPro)|GO:0016020(InterPro)
Cco03g0818 982 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 97 981 IPR004842 GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER)
Cco03g0818 982 Pfam Solute carrier family 12 781 981 IPR018491 GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco03g0818 982 Pfam Solute carrier family 12 651 772 IPR018491 GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco03g0818 982 Pfam Amino acid permease 141 609 IPR004841 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0818 K14427 - csv:101216218 1858.57