Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0821 ATGGCTCTTGTCGTGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGCCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTCTGCAGACACAAGTCTCTCGTTTGGTTTACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAAGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTATCCAAGGCAACAGGAACTGCCGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTTAGTCTTGAGCCCATGAAGGTGGCCGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTACTAAGTGCAATCTCTACAGGAAATGGGGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCATTAAGGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTAAGAGCTGAAATGCTTCCAAGCGGGTATCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTGCGCTATGTTCGACAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGAGGCCGCCAACCGGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGCTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAATAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCGCAATATAACACTTCATTGTATCCTACTTTTGGAGGTGTATTGTGTGCCAAGGCGTCAATGTTACTACAGAATGTACCCCCTGCGTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTCGATGCGTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGATCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCACATACGGTTGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGATGAATCATTTGCCGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGCCTGCAGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGAACTACCCGCCCAGGAGGTGAAACTGATGTTTCAAACTACAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTCGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACTGTTGTGGGATCAGTTCAAAGGGTTGCCATGGCTATCGCCCCCTCGCAGCTTGGCCCCCAAATCGGTCCAAAAAGCCTTCCCGGCTCCCCAGAGGCTCTCACATTAGCTCAGTGGATCGCACGAAGCTATAGGATCCACTCAGGGACAGAGCTCTTTCAAGTTGAATCCCTATCTGATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTTTTCACATTTGCGAACCAAGCTGGACTTGACATGCTCGAAACTACCCTAGTCGCTCTTCAAGATATAACGCTTGACAAGATCCTCGATGATGCTGGCCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGGCTGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTGTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATTAAGAACAAAGAGTCGGCTAAACTATTAGTAGGAGTTGAAACTGCAATGGTTGAGAAGTTGCATCCTTCTGAACAGGAACTTGCCAATTCATGTATCTTTTTGGACAATGAAATTGGAGATAGAATCTGCATTAGCGTTATCAACAGCTTTTCTGAATCTCCCTCTTTTATTTCTTCAGGCTATCTGAAGAAATCTGGTTTATGA 2715 46.0 MALVVHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSAISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLRSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGIEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARSGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGETDVSNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGPQIGPKSLPGSPEALTLAQWIARSYRIHSGTELFQVESLSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRLVSYEQAIAWKVVNDDDVHHCLAFIKNKESAKLLVGVETAMVEKLHPSEQELANSCIFLDNEIGDRICISVINSFSESPSFISSGYLKKSGL 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8987953 8999045 + CcPI632755_03g008210.1 Cco03g0821 174180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0821 904 MobiDBLite consensus disorder prediction 126 156 - -
Cco03g0821 904 Pfam MEKHLA domain 699 837 IPR013978 -
Cco03g0821 904 Gene3D - 10 84 - -
Cco03g0821 904 Gene3D - 186 377 IPR023393 -
Cco03g0821 904 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cco03g0821 904 Coils Coil 87 107 - -
Cco03g0821 904 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700(InterPro)
Cco03g0821 904 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Cco03g0821 904 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cco03g0821 904 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cco03g0821 904 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cco03g0821 904 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
Cco03g0821 904 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cco03g0821 904 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Cco03g0821 904 SUPERFAMILY Bet v1-like 166 376 - -
Cco03g0821 904 CDD bZIP 70 109 - -
Cco03g0821 904 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2268 Cco-Chr2:35217665 Cco03g0821 Cco-Chr3:8987953 0.00E+00 dispersed
Cco03g0821 Cco-Chr3:8987953 Cco09g0011 Cco-Chr9:73107 0.00E+00 dispersed
Cco03g0821 Cco-Chr3:8987953 Cco04g2301 Cco-Chr4:36539751 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58938 PF01852 START 7.30E-50 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0821 K09338 - csv:101211318 1592.79