Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0822 ATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCGCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTTAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATATCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTGTGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCAGGAATATGGACCTTTGAAGTTGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCAATGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGACGACAGTGCTGTCGTCATCGTCGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA 999 41.24 MSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAADPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERLKFIRSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFVGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDVISANDLMGEAEIDLQPMITSAMAFGDAEMFENMQIGKWLKSDDNALIDDSAVVIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8999068 9002035 + CcPI632755_03g008220.1 Cco03g0822 174181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0822 332 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 332 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cco03g0822 332 Gene3D Arf GTPase activating protein 4 136 IPR038508 -
Cco03g0822 332 Pfam C2 domain 176 263 IPR000008 -
Cco03g0822 332 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 327 IPR035892 -
Cco03g0822 332 Gene3D C2 domain 174 332 IPR035892 -
Cco03g0822 332 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cco03g0822 332 CDD ArfGap 18 124 - -
Cco03g0822 332 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 174 332 - -
Cco03g0822 332 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cco03g0822 332 SMART C2_3c 177 272 IPR000008 -
Cco03g0822 332 CDD C2_ArfGAP 175 319 - -
Cco03g0822 332 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cco03g0822 332 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cco03g0822 332 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cco03g0822 332 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cco03g0822 332 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cco03g0822 332 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 146 IPR001164 GO:0005096(InterPro)
Cco03g0822 332 ProSiteProfiles C2 domain profile. 159 275 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0822 Cco-Chr3:8999068 Cco06g1624 Cco-Chr6:26838525 1.40E-34 dispersed
Cco01g0813 Cco-Chr1:8543281 Cco03g0822 Cco-Chr3:8999068 8.30E-37 transposed
Cco05g2942 Cco-Chr5:36885713 Cco03g0822 Cco-Chr3:8999068 9.10E-90 transposed
Cco03g0822 Cco-Chr3:8999068 Cco04g2303 Cco-Chr4:36568251 1.90E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0822 K12486 - csv:101211569 584.334