Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0828 ATGTCTTTGCTTAGACCTTACGGTAAGGTCGACGAAACCGACCAATTGAGGCTCGATGCTAGCCGGCGGACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGGTGTTGTGTTTGGTACTAGAAATGCTTCCAACAAAAATGATGACAGTAACAATCAAAATGGTGCTCTTTCAACTTCAATCAAAGCAATTTGTGATGTGACTTTGTATCCTGATACATGTCACAATGCTTTTGGTCCTTTAGCTAACTTGAGCCATCTCGACCCCAGTGAGATATCCAAGCTTTCGGTTCAATTGGCGCTCGATGAATTGTCGCGAGTGGCTAACTACATTTTTTATCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGGAAAATTGTCATGAACTTTTGGACTTAGCATTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACTTTGCTTAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGTATCGACGGCCTCGCGGAAGTTGATCCAGCTTTGGCGAACCTCATTGCAAATTACTTGAAGAACTCCACTGAATTGACTAGCAATGGTCTTGCCATTCTGTCGTTCTTTTCAAAGCTTACAGATTCTTTAAGTCTACGACGATTGATGAGTTATGATAATCGCCAAAGCAAGGGAGATTGGGTGCGGCCGATACTCCGAAAGCTAGCTCAAACCGATATCAGGAAGCAGGCTAACATCGTCGTAGCGATAGACGGTTCGGGAAAGTACAAAACAATCTCTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAATTGTGATCTATGTGAAGAAGGGAACTTACAAGGAGAATGTTGAAGTTAAGAAGAACAAATGGAACGTGGTGATGGTTGGTGATGGAATGAATGCAACCACAGTAACTGGCAGCCTTAATTTTATAGATGGGACACCAACATTTTCAACTGCAACATTTGCTGCAAAAGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACTGCTGGACCGAGCAAACACCAGGCGGTCGCTCTGATGTCGACATCCGACCAATCAATCTTCTACCGTTGCCGTATAGAGGCATACCAAGACAGTCTCTACGCGCACTCCAACCGTCAATTCTACCGTGAATGCAACGTTTACGGCACGGTTGATTTCATCTTCGGAAATTCAGCAGTAGTCCTACAAAACTGCACTATTGCACCCAAGTTGCCTCTTTTAGGCCAAATGAATACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCGGTACAAGGCTGTTCAATCCGACCGTTCGAGAACTTGAAAGCTACCAAAACTTATCTCGGTCGTCCGTGGAAGAACTACTCGACGACGGTCTATATGCAAAATAATTTGGGGAGCTTGATTGACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCCAAAAGAGTGAAATGGAAGGGTGTGAAGAACATTAGCATTAAAACTGCCAAAGAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCAATGCCAACCTTTGA 1704 43.49 MSLLRPYGKVDETDQLRLDASRRTRKRIAVIVLSSVVLVGVVVGVVFGTRNASNKNDDSNNQNGALSTSIKAICDVTLYPDTCHNAFGPLANLSHLDPSEISKLSVQLALDELSRVANYIFYHAITNSTDNKTILALENCHELLDLALDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALANLIANYLKNSTELTSNGLAILSFFSKLTDSLSLRRLMSYDNRQSKGDWVRPILRKLAQTDIRKQANIVVAIDGSGKYKTISAALKAVPDKSKKRIVIYVKKGTYKENVEVKKNKWNVVMVGDGMNATTVTGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCRIEAYQDSLYAHSNRQFYRECNVYGTVDFIFGNSAVVLQNCTIAPKLPLLGQMNTITAQGRFDPNQNTGISVQGCSIRPFENLKATKTYLGRPWKNYSTTVYMQNNLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGVKNISIKTAKEFTVSSFIDGKDWISKAQVPFNANL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9151583 9153520 + CcPI632755_03g008280.1 Cco03g0828 174187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0828 567 FunFam Pectinesterase 255 567 - -
Cco03g0828 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco03g0828 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Cco03g0828 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857(InterPro)
Cco03g0828 567 NCBIfam pectinesterase inhibitor domain 63 216 IPR006501 GO:0004857(InterPro)
Cco03g0828 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Cco03g0828 567 SUPERFAMILY Pectin lyase-like 259 564 IPR011050 -
Cco03g0828 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Cco03g0828 567 SMART PMEI_2 65 215 IPR006501 GO:0004857(InterPro)
Cco03g0828 567 FunFam Pectinesterase 66 220 - -
Cco03g0828 567 PANTHER PECTINESTERASE 27 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco03g0828 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cco03g0828 567 Gene3D - 256 567 IPR012334 -
Cco03g0828 567 CDD PMEI-like_3 72 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0828 Cco-Chr3:9151583 Cco07g1509 Cco-Chr7:29142224 4.20E-124 dispersed
Cco03g0828 Cco-Chr3:9151583 Cco05g0741 Cco-Chr5:6085978 3.40E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0828 - - - 0.0