Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0832 ATGACTTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTGATTCAATACCGAATTGTTTGCCAGCAAGTCAATGTTTCTTCTTTGGAGGAAGTAATTAAACACTTTATGCATCTCTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTAGATGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAAGATAGATCTGATCGCGAACTCGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTGCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGGTGTATAAAAGAACAACAGAATTTCGCAGATTGTGTGAAATTATCAGAAATCATCTTGCCAACCTCAACAAGTACAGAGACCAAAGGGATCGGCCTGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACCGAGATCTTCTGGATATCCAATAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGCTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTCAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCGCTTGATCTTGCAACAAAATTGCAACCCTTATTAAACAAAGTATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATACGTTCCGGCTCTTGAGAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCGAGGAACATTGTGTCATTTGGCAATTTGGGTATTGAATCAGATGGGCTTGGGGACCACCTGACTGTTCTTGCTGAATCCTTAAATAAAGCAAGAGCTATGATCTATCCTCCAGTTATGAATGCATCAAAAACAAGTGATATATTGCCTGATTTGGCTGATATTGTTGATAAGGAGCATAAGAGGCTGCTTGCTCGTAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAACGGCAACTTTTGGAAATGGAACGCGAGGAGGAATCAAGAAGGTTGAAATTACTAAAGATAACAGAAGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATACGAACAAAGAAAAAACCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTACAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTTGACTCCGAAAAGTTGACGAAACAAACTCTAATGCAATTGGCCCTTACTGAACAATTGAGGGAGAGGCAGGAAATGGAGAAGAAACTACAAAAGCTAGCCAAGACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGATGCTGCATTTCAGCAGCGATTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGCTAGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGATGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATTGGTCTTCGCCAAGAGGAATTCAGCAGGCGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAATAATTCAGGCCCGAAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTGCGCGAAGAGGAGGAAGCACGCAAGCGTCAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCCTCTGGAGTCTGGGACTGCTGCTCCTGCCGCTGCTGCAGCTGCCGCACCATCTCCAGCAAAATACGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACCGCTACTGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGTCATCGTGGTCCTCATCCCGAGTTCCTACTCGTGCTAGCACGGACCGCTGA 2907 43.93 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISNSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLFSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKVSKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVSFGNLGIESDGLGDHLTVLAESLNKARAMIYPPVMNASKTSDILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIDAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMMESKKIFQERVIGLRQEEFSRRRAEREEQIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKRQEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRPLESGTAAPAAAAAAAPSPAKYVPRFRRSEGSTATAPPPESDRWGSSRPDNRPSQPDSWRSDDRRPAFGSSRSSWSSSRVPTRASTDR 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9204012 9213968 + CcPI632755_03g008320.1 Cco03g0832 174191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0832 968 Coils Coil 603 649 - -
Cco03g0832 968 Coils Coil 774 794 - -
Cco03g0832 968 Coils Coil 93 120 - -
Cco03g0832 968 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cco03g0832 968 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 943 IPR027512 GO:0005852(InterPro)
Cco03g0832 968 MobiDBLite consensus disorder prediction 814 968 - -
Cco03g0832 968 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
Cco03g0832 968 Pfam PCI domain 438 509 IPR000717 -
Cco03g0832 968 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Cco03g0832 968 Gene3D UVR domain 217 268 - -
Cco03g0832 968 Coils Coil 799 858 - -
Cco03g0832 968 MobiDBLite consensus disorder prediction 948 968 - -
Cco03g0832 968 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Cco03g0832 968 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Cco03g0832 968 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 959 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cco03g0832 968 MobiDBLite consensus disorder prediction 814 861 - -
Cco03g0832 968 Coils Coil 669 699 - -
Cco03g0832 968 Coils Coil 561 600 - -
Cco03g0832 968 Gene3D - 269 343 - -
Cco03g0832 968 Gene3D - 363 494 - -
Cco03g0832 968 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0832 Cco-Chr3:9204012 Cco03g1822 Cco-Chr3:32859888 0.00E+00 dispersed
Cco03g0832 Cco-Chr3:9204012 Cco03g0833 Cco-Chr3:9232646 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0832 K03254 - csv:101209344 1562.36