Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0833 ATGAAACCTTCTCTTCTTATCATTAAAAAGGTTCCACGTTTCCAAATTTCATCGCTTTCAGCAGCCGTTTTTCAATCAGTCTCCACCGTCGGTCTCTCTCTCGCAATCAGTCTCCACCGTCGGTCTCTCTTCTCCGCCTTTCCATTCTCCGTGGTCGGTGTCTTAGTCGCTCTCTCTCTCACAACCAGTCTCCACGTTTCCGTCGTCGAAGGTCTTTCGTGGAACTTCTGTTCGCAAGTCATTCAGCGTTGCATGCTGTCCTTGGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAGCCTCTTGAGAAGATTATGTTCAAGTATGTTGAACTGTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTACTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTAGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTCGACACTAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTTTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATCCATGGTTTGATGTGCATGGTGAAGAAGACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGGACAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAACTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCCCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTCTCGAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTTTTCCCTCTTGATCTTGCAACAAAATTGCAACCATTACTTAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAGTTGTCTCAATATGCTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACAATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCATGGAGAAGATATTAGTTGATGCAGTTAAACAGAATTTCATTGCCATGAAAGTTGATCACTCAAAGAATATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTACGAGACCACCTGACCGCTCTTGCAGAATCCTTAAACAAAGCAAGAGATATGATCTATCCTCCAGTTAGGAAAGCCTCGAAAACAGGTGATATGTTGCCTGATTTGGCAGATATTGTTGACAAAGAGCACAAGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGACTCTGAAAAGTTGTCGAAACAAACTTTAATGCAGTTGGCCCTTACTGAACAATTAAGGGAGAGACAAGAAATGGAGAAGAAATTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATCCATGAACGTAATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCGAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTAATTAGTCTTCGACAAGAGGAATTCAGCAGACGTAGAGCTGAGAGAGAAGAACATATCAGGCAAATAATTCTGGCCCGGAAAGCGGAAAGGGAGGCTAAGAGGAAGAAAATATTTTATGTAAGGTGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGAAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCCTCTGGAGTCTGGGACTGCTGCTCCTGCCGCTGCTGCAGCTGCCGCACCATCTCCAGCAAAATACGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACCGCTACTGCACCACCATCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGACATCGTGGTCCTCATCCCGAGTTCCTACTCGTACCAGCACGGACCGCTGA 3150 43.62 MKPSLLIIKKVPRFQISSLSAAVFQSVSTVGLSLAISLHRRSLFSAFPFSVVGVLVALSLTTSLHVSVVEGLSWNFCSQVIQRCMLSLENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARTQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLATLAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYAPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAMEKILVDAVKQNFIAMKVDHSKNIVLFGNLGIESDGLRDHLTALAESLNKARDMIYPPVRKASKTGDMLPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERNQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVISLRQEEFSRRRAEREEHIRQIILARKAEREAKRKKIFYVRCEEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRPLESGTAAPAAAAAAAPSPAKYVPRFRRSEGSTATAPPSESDRWGSSRPDNRPSQPDSWRSDDRRPAFGSSRTSWSSSRVPTRTSTDR 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9232646 9243969 - CcPI632755_03g008330.1 Cco03g0833 174192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0833 1049 Coils Coil 174 201 - -
Cco03g0833 1049 MobiDBLite consensus disorder prediction 896 942 - -
Cco03g0833 1049 Coils Coil 890 939 - -
Cco03g0833 1049 Coils Coil 684 730 - -
Cco03g0833 1049 Gene3D UVR domain 298 349 - -
Cco03g0833 1049 Coils Coil 750 780 - -
Cco03g0833 1049 MobiDBLite consensus disorder prediction 993 1015 - -
Cco03g0833 1049 ProSiteProfiles PCI domain profile. 397 594 IPR000717 -
Cco03g0833 1049 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 89 1040 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cco03g0833 1049 Pfam eIF3a, PCI domain, TPR-like region 89 488 IPR054711 -
Cco03g0833 1049 FunFam Eukaryotic translation initiation factor 3 subunit A 433 575 - -
Cco03g0833 1049 FunFam Eukaryotic translation initiation factor 3 subunit A 349 423 - -
Cco03g0833 1049 FunFam Eukaryotic translation initiation factor 3 subunit A 298 349 - -
Cco03g0833 1049 Coils Coil 642 681 - -
Cco03g0833 1049 MobiDBLite consensus disorder prediction 896 1049 - -
Cco03g0833 1049 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 84 1033 IPR027512 GO:0005852(InterPro)
Cco03g0833 1049 MobiDBLite consensus disorder prediction 1029 1049 - -
Cco03g0833 1049 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 522 613 IPR000717 -
Cco03g0833 1049 Coils Coil 813 833 - -
Cco03g0833 1049 Coils Coil 85 105 - -
Cco03g0833 1049 Gene3D - 350 424 - -
Cco03g0833 1049 Gene3D - 444 575 - -
Cco03g0833 1049 Pfam PCI domain 519 589 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0833 Cco-Chr3:9232646 Cco03g1822 Cco-Chr3:32859888 0.00E+00 dispersed
Cco03g0832 Cco-Chr3:9204012 Cco03g0833 Cco-Chr3:9232646 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0833 K03254 - csv:101215735 1538.09