Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0833 | ATGAAACCTTCTCTTCTTATCATTAAAAAGGTTCCACGTTTCCAAATTTCATCGCTTTCAGCAGCCGTTTTTCAATCAGTCTCCACCGTCGGTCTCTCTCTCGCAATCAGTCTCCACCGTCGGTCTCTCTTCTCCGCCTTTCCATTCTCCGTGGTCGGTGTCTTAGTCGCTCTCTCTCTCACAACCAGTCTCCACGTTTCCGTCGTCGAAGGTCTTTCGTGGAACTTCTGTTCGCAAGTCATTCAGCGTTGCATGCTGTCCTTGGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAGCCTCTTGAGAAGATTATGTTCAAGTATGTTGAACTGTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTACTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTAGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTCGACACTAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTTTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATCCATGGTTTGATGTGCATGGTGAAGAAGACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGGACAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAACTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCCCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTCTCGAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTTTTCCCTCTTGATCTTGCAACAAAATTGCAACCATTACTTAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAGTTGTCTCAATATGCTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACAATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCATGGAGAAGATATTAGTTGATGCAGTTAAACAGAATTTCATTGCCATGAAAGTTGATCACTCAAAGAATATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTACGAGACCACCTGACCGCTCTTGCAGAATCCTTAAACAAAGCAAGAGATATGATCTATCCTCCAGTTAGGAAAGCCTCGAAAACAGGTGATATGTTGCCTGATTTGGCAGATATTGTTGACAAAGAGCACAAGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGACTCTGAAAAGTTGTCGAAACAAACTTTAATGCAGTTGGCCCTTACTGAACAATTAAGGGAGAGACAAGAAATGGAGAAGAAATTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGATCCATGAACGTAATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCGAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTAATTAGTCTTCGACAAGAGGAATTCAGCAGACGTAGAGCTGAGAGAGAAGAACATATCAGGCAAATAATTCTGGCCCGGAAAGCGGAAAGGGAGGCTAAGAGGAAGAAAATATTTTATGTAAGGTGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGAAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCCTCTGGAGTCTGGGACTGCTGCTCCTGCCGCTGCTGCAGCTGCCGCACCATCTCCAGCAAAATACGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACCGCTACTGCACCACCATCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGACATCGTGGTCCTCATCCCGAGTTCCTACTCGTACCAGCACGGACCGCTGA | 3150 | 43.62 | MKPSLLIIKKVPRFQISSLSAAVFQSVSTVGLSLAISLHRRSLFSAFPFSVVGVLVALSLTTSLHVSVVEGLSWNFCSQVIQRCMLSLENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARTQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLATLAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYAPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAMEKILVDAVKQNFIAMKVDHSKNIVLFGNLGIESDGLRDHLTALAESLNKARDMIYPPVRKASKTGDMLPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERNQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVISLRQEEFSRRRAEREEHIRQIILARKAEREAKRKKIFYVRCEEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRPLESGTAAPAAAAAAAPSPAKYVPRFRRSEGSTATAPPSESDRWGSSRPDNRPSQPDSWRSDDRRPAFGSSRTSWSSSRVPTRTSTDR | 1049 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9232646 | 9243969 | - | CcPI632755_03g008330.1 | Cco03g0833 | 174192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0833 | 1049 | Coils | Coil | 174 | 201 | - | - | |
Cco03g0833 | 1049 | MobiDBLite | consensus disorder prediction | 896 | 942 | - | - | |
Cco03g0833 | 1049 | Coils | Coil | 890 | 939 | - | - | |
Cco03g0833 | 1049 | Coils | Coil | 684 | 730 | - | - | |
Cco03g0833 | 1049 | Gene3D | UVR domain | 298 | 349 | - | - | |
Cco03g0833 | 1049 | Coils | Coil | 750 | 780 | - | - | |
Cco03g0833 | 1049 | MobiDBLite | consensus disorder prediction | 993 | 1015 | - | - | |
Cco03g0833 | 1049 | ProSiteProfiles | PCI domain profile. | 397 | 594 | IPR000717 | - | |
Cco03g0833 | 1049 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 89 | 1040 | IPR027512 | GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER) | |
Cco03g0833 | 1049 | Pfam | eIF3a, PCI domain, TPR-like region | 89 | 488 | IPR054711 | - | |
Cco03g0833 | 1049 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 433 | 575 | - | - | |
Cco03g0833 | 1049 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 349 | 423 | - | - | |
Cco03g0833 | 1049 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 298 | 349 | - | - | |
Cco03g0833 | 1049 | Coils | Coil | 642 | 681 | - | - | |
Cco03g0833 | 1049 | MobiDBLite | consensus disorder prediction | 896 | 1049 | - | - | |
Cco03g0833 | 1049 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 84 | 1033 | IPR027512 | GO:0005852(InterPro) | |
Cco03g0833 | 1049 | MobiDBLite | consensus disorder prediction | 1029 | 1049 | - | - | |
Cco03g0833 | 1049 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 522 | 613 | IPR000717 | - | |
Cco03g0833 | 1049 | Coils | Coil | 813 | 833 | - | - | |
Cco03g0833 | 1049 | Coils | Coil | 85 | 105 | - | - | |
Cco03g0833 | 1049 | Gene3D | - | 350 | 424 | - | - | |
Cco03g0833 | 1049 | Gene3D | - | 444 | 575 | - | - | |
Cco03g0833 | 1049 | Pfam | PCI domain | 519 | 589 | IPR000717 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0833 | Cco-Chr3:9232646 | Cco03g1822 | Cco-Chr3:32859888 | 0.00E+00 | dispersed | |
Cco03g0832 | Cco-Chr3:9204012 | Cco03g0833 | Cco-Chr3:9232646 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0833 | K03254 | - | csv:101215735 | 1538.09 |