Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0867 ATGTTCTGTAGTTTGTTTGAGATGGACAACAATTATCAGCAAGCTGGTGATTTGACTGATGTAATTCGACTCAGTTCCGCCGCCGTTGCCGGTGGCCTCTCATCGGAATTCTCTCTCGACCCTTCTTCCAGTGACCGACGACTCTGGCCTCACCTAACCGCCGATGAATCTTCAATGAATTTCGGAGATCCGTTGTTGTTTCCGACTAGTAGTGCTCGAGATCCGTTTCTTCATCCTCATTTTTCTGCTTTCAATTTAGCTTCTGACGTCGGCGGTGAGGGTTTGGCGGCGGTGGACCAGCCGTCTAATTTACTTTCACATATGTTGCAGATCTCTCCGAGTTCCGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGTTCGCCACGGCGGTGGGGAATTCTACGTGCTCGGCTTCAGCTTGCAGTGGCGGTGTCGTGCTTCCGACCGGTGGCTCGAATCCTCTTTGTTTAATGGAGAATTCTGGGATTCAGATCTCTTCCCCACGTAATTCCACCACTAAAAGAAGGAAGAGCCAAGTGAAGAAGGTGGTGTGCATTCCGGCACCGGCACCGGCGAACAACCGATCAAGCAGCGGTGAAGTGGTTCCTTCTGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGCTCAAAGGGCTGCTCCGCTCGAAAGCAGGTCGAGCGCAGTCGAACCAACCCCAACATGCTTGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCTCTTGCAGGCTCAACACGCTCCCACCCTTCTCGAACCCCTACCACCCCCACCGCTCGTAAAACAAGCCCAAAACACGAGCGCACCAACAACAACCAACCAACCACAACACTAAAGGAGGAAGAGATGGATGCAGACCAAACGACAGAAAAAGCAATAGCAACAACAACAAACGATCATCAGGAAGATGGAGATCATCAGAATTTTCCTTATGACTTAATTTTCACTGAATTTGTTGACCATGACAACGACCACGACCATCATCATCTTTCAGCAGACCCTCTAAACAACAATATGTTGCTGTTTAGTAGCCATGGCTTTAGTACAGGAAATGGAGAAGGGAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGATAATTCAAATGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA 1230 49.02 MFCSLFEMDNNYQQAGDLTDVIRLSSAAVAGGLSSEFSLDPSSSDRRLWPHLTADESSMNFGDPLLFPTSSARDPFLHPHFSAFNLASDVGGEGLAAVDQPSNLLSHMLQISPSSGDGVISTPPCESFATAVGNSTCSASACSGGVVLPTGGSNPLCLMENSGIQISSPRNSTTKRRKSQVKKVVCIPAPAPANNRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTPTTPTARKTSPKHERTNNNQPTTTLKEEEMDADQTTEKAIATTTNDHQEDGDHQNFPYDLIFTEFVDHDNDHDHHHLSADPLNNNMLLFSSHGFSTGNGEGSKDPFLELYDWADNSNGSLFKEAKGG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10274534 10278176 + CcPI632755_03g008670.1 Cco03g0867 174226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0867 409 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0867 409 Gene3D WRKY domain 177 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0867 409 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0867 409 SMART WRKY_cls 204 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0867 409 SUPERFAMILY WRKY DNA-binding domain 202 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0867 409 MobiDBLite consensus disorder prediction 259 316 - -
Cco03g0867 409 FunFam probable WRKY transcription factor 14 177 258 - -
Cco03g0867 409 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 72 330 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cco03g0867 409 MobiDBLite consensus disorder prediction 259 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0703 Cco-Chr3:7237583 Cco03g0867 Cco-Chr3:10274534 1.90E-29 dispersed
Cco03g0867 Cco-Chr3:10274534 Cco05g0161 Cco-Chr5:1259122 4.80E-37 dispersed
Cco01g0969 Cco-Chr1:11379576 Cco03g0867 Cco-Chr3:10274534 1.30E-08 transposed
Cco03g0867 Cco-Chr3:10274534 Cco04g2328 Cco-Chr4:36737386 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58941 PF03106 WRKY 4.20E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0867 - - - 0.0