Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0873 ATGAAGAGAGAGCTTGAAGATGATAGATCTACTGCAGGCTGTGGCCGCAGGGTTGTCAAAGGAGAGCGTTCTTCAATGTCGAGTGGGAAAGTGAAGATGTGGCAGGAGGAGGAGAAGCAAGACGGCGGCGGCGGCGGAATGGATGAGTTGCTTGCTGTTTTGGGCTACAAGGTTCAAGCCTCGGAAATGGCGGATGTGGCTTTGAAGCTTGAACAGCTTGAGATGATGATGGGAGCTGCTCAGGAAGATGGGATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCCGCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAACCCTCCCCCTCAATCTTCTCCGTATTCCAATTCTCACCACAGGATTCAATCCACCACATCGTGTTTATACGACGATGATTCTGAGTACGATCTTAGCGCCATTCCTGGTGTTGCAGTTTTGCCTCCTAAAGATTCCTCCACACAAACTGAAACTAATTCTCGTAAGCGATTGAAGGTTGAAGGAGATATCGGTTCGGTGAATTTGTTACCGTCGCCGTCGTCTTCTTCACCGCCGTTTGTTGCTACGGCGGGGATTGTCTCTGAAACTTCGCGGCCGGTGGTGGTTGTGGAGGAGGATTCACAAGAGACTGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCGGTGCAGCAAGAGAATATGAAGCTCGCCGATGCGTTGGTGAAGCACATCGGATTTCTTGCAGCGTCGCAAGCCGGCGCTATGAGGAAAGTCGCGACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACGGAATCTATTCTCCTCAAGACGGACTTTACTCCTCCTACTCCGATCCTCTCCAGATGCACTTCTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCTATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTTATGCAAGCACTCGCATTACGCCCTGGAGGTCCGCCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCAGATAATACGGCGGATTCGTTACAGCAAGTCGGTTGGAAGTTAGCGCAGTTGGCAGAGGCCATTGGTGTTGAGTTCGAGTTCAATCACATCGTGTGTAGTAGTCTCGCGGATCTCGATCCGGCGGCTCTAGAGATTCGACCGACGGCGGTGGAGGCGGTGGCGGTAAACTCAGTGTTCGATCTGCACCGGTTGTTGGCTCGGCCTGGAGCGATAGAAAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATCGTGACGATTGTGGAACAAGAAGCGAACCACAACGGGCCGGTTTTCCTGGACCGGTTTACTGAGGCGCTGCATTATTACTCGAACCTGTTTGACTCGCTGGAGGGGTTGTCGACCGGGTTGGAACCGGCAAGTGAAGACGTGTTGTTATCCGAGGTTTATTTGGGTAGGCAGATTTGCAACGTGGTGGCTTGTGAAGGAACGAACCGAGTTGAAAGGCACGAGTCATTGACTCAGTGGCGAACTCGAATGGAATCGGCTGGGTTTGACCCGGTCCATCTCGGTTCGAACGCGTTTAAGCAAGCTAGTATGCTTTTGGCCCTCTTTGCTGGTGGAGAAGGGTACAGGGTGGAGGAGAATAATGGTTGTTTAATGCTAGGCTGGCACACTAGACCGTTGATTGCCACGTCAGCATGGCAACTCGCTCCCGATGAGTCAAAGTGA 1800 51.28 MKRELEDDRSTAGCGRRVVKGERSSMSSGKVKMWQEEEKQDGGGGGMDELLAVLGYKVQASEMADVALKLEQLEMMMGAAQEDGISHLASDTVHYNPSDLSAWVQNMLSEFNNSTNHFNPPPQSSPYSNSHHRIQSTTSCLYDDDSEYDLSAIPGVAVLPPKDSSTQTETNSRKRLKVEGDIGSVNLLPSPSSSSPPFVATAGIVSETSRPVVVVEEDSQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYGIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTADSLQQVGWKLAQLAEAIGVEFEFNHIVCSSLADLDPAALEIRPTAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGLSTGLEPASEDVLLSEVYLGRQICNVVACEGTNRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDESK 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10432190 10433989 + CcPI632755_03g008730.1 Cco03g0873 174232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0873 599 ProSiteProfiles GRAS family profile. 217 592 IPR005202 -
Cco03g0873 599 Pfam Transcriptional regulator DELLA protein N terminal 48 115 IPR021914 -
Cco03g0873 599 Pfam GRAS domain family 226 592 IPR005202 -
Cco03g0873 599 MobiDBLite consensus disorder prediction 1 16 - -
Cco03g0873 599 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 179 591 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cco03g0873 599 Coils Coil 63 83 - -
Cco03g0873 599 MobiDBLite consensus disorder prediction 1 44 - -
Cco03g0873 599 SMART DELLA_2 48 121 - -
Cco03g0873 599 Gene3D - 46 111 IPR038088 -
Cco03g0873 599 FunFam DELLA protein GAI 46 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0663 Cco-Chr1:6788263 Cco03g0873 Cco-Chr3:10432190 5.70E-193 dispersed
Cco03g0873 Cco-Chr3:10432190 Cco05g1320 Cco-Chr5:13769902 1.90E-175 dispersed
Cco03g0873 Cco-Chr3:10432190 Cco03g0141 Cco-Chr3:1373861 1.40E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58942 PF03514 GRAS 1.30E-134 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0873 K14494 - csv:101213911 1041.95