Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0877 | ATGGCACTTGCAAATTCAGCTCTACAAGAAGTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGAGCAGCAGCAGCAGCAGCAACAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGAAGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGGTCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCGTTCAAGAAGCTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGAGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGTACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAGTTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAAAAGTGA | 876 | 40.18 | MALANSALQEVDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLEQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFEAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAVQEAEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK | 291 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10562778 | 10565443 | - | CcPI632755_03g008770.1 | Cco03g0877 | 174236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0877 | 291 | Pfam | Helix-loop-helix DNA-binding domain | 202 | 244 | IPR011598 | GO:0046983(InterPro) | |
| Cco03g0877 | 291 | CDD | bHLH_AtIND_like | 195 | 257 | - | - | |
| Cco03g0877 | 291 | FunFam | Transcription factor bHLH83 | 192 | 251 | - | - | |
| Cco03g0877 | 291 | SMART | finulus | 200 | 249 | IPR011598 | GO:0046983(InterPro) | |
| Cco03g0877 | 291 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 192 | 252 | IPR036638 | GO:0046983(InterPro) | |
| Cco03g0877 | 291 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 194 | 243 | IPR011598 | GO:0046983(InterPro) | |
| Cco03g0877 | 291 | MobiDBLite | consensus disorder prediction | 187 | 206 | - | - | |
| Cco03g0877 | 291 | Gene3D | - | 187 | 251 | IPR036638 | GO:0046983(InterPro) | |
| Cco03g0877 | 291 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 90 | 256 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0877 | Cco-Chr3:10562778 | Cco10g1016 | Cco-Chr10:21824618 | 2.10E-18 | dispersed | |
| Cco03g0877 | Cco-Chr3:10562778 | Cco08g1827 | Cco-Chr8:29297293 | 1.60E-18 | transposed | |
| Cco03g0877 | Cco-Chr3:10562778 | Cco05g2315 | Cco-Chr5:31736835 | 1.60E-18 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 58943 | PF00010 | HLH | 9.30E-08 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0877 | - | - | - | 0.0 |