Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0900 ATGGCCATAAGCGGGGGAAGAGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAAGCCGACGGCGGCCGGATTCGTCGGAGGAGGAGGAGTATAACGTAGAGAGCGTTGGTGAAGGGATAAAGTCGTCGCGAGGGAGCCGGTTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAATCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGGTGGTATAGGGCTTGGACGAAGTTCATACTAGTATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGATTCTTCCGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACCTTTGTGACTGATTTGCTCAGCTGTTTGCCCTGGGACATCATTTATAAGGCTTGTGGGAAGAGAGAAGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCGATGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTAGGGGATTACAGCTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTAACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTATGTGTCATTTGACATGGTTCTCGGCGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAGGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAATCATTGTACTTGCCTTATATTCAGAATGTTTCTCTCTTTAGAGGATGCTCCCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTAGTTGATCAACTTTATTTTGTATGCCATGGTGTACTGGAGGAAGTAGGAATAGGACAAGATGGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAACATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGGAAAATCTTGAACAACCTTCTACAGGGAAAAGAAACGAACCTTCGAGTTAAGCAATTGGAGTCCGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCCCTCAAGGTGAACAGTGCAGCATATCATGGTGATCTGTACCAATTAAAAGGCCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTAGTTTTCCTTATTCAGGAAGGAGTAAAAATTGACCTTACAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGTGCTTCATTGAAGGTTGAAAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCGGATCTTCTTAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCGCTACATATAGCTGCCTCAGAAGGACTAACTTTGATGGCAAAATTGCTCTTAGAATCTGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGAATTTGTGGAAATAAGAATATGCTTAAGCTCTTGGAAGAGGCAAGAGCTTCTCAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAGCACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCGTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTGATCAAGGAATCATCAGAGCAGCTACAAGTTTCGGGTGAATGTTGTATATTATCAGAAGATGGGGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA 2496 41.51 MAISGGREEEEEEEEERSRRRPDSSEEEEYNVESVGEGIKSSRGSRFNLIQKQLRIERNRRRFSRENLINGIKCLVILPDSRWYRAWTKFILVWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCLPWDIIYKACGKREEVRYLLWIRLFRVRKVDAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQSLYLPYIQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVKIDLTDNFGNTPLLEAIKNGNDQVAVLLSKQGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPFHPWDREENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH 831
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 11221898 11231930 + CcPI632755_03g009000.1 Cco03g0900 174259
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0900 831 MobiDBLite consensus disorder prediction 13 28 - -
Cco03g0900 831 Gene3D - 87 331 - -
Cco03g0900 831 PRINTS EAG/ELK/ERG potassium channel family signature 120 130 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0900 831 PRINTS EAG/ELK/ERG potassium channel family signature 277 294 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0900 831 PRINTS EAG/ELK/ERG potassium channel family signature 321 330 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0900 831 PRINTS EAG/ELK/ERG potassium channel family signature 229 239 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco03g0900 831 MobiDBLite consensus disorder prediction 1 39 - -
Cco03g0900 831 Pfam KHA, dimerisation domain of potassium ion channel 757 826 IPR021789 -
Cco03g0900 831 CDD CAP_ED 405 519 IPR000595 -
Cco03g0900 831 Pfam Ion transport protein 84 332 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0900 831 Pfam Ankyrin repeats (3 copies) 557 644 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 Pfam Ankyrin repeats (3 copies) 651 733 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 ProSiteProfiles Ankyrin repeat profile. 679 711 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 ProSiteProfiles Ankyrin repeat region circular profile. 615 646 - -
Cco03g0900 831 SUPERFAMILY Ankyrin repeat 554 734 IPR036770 -
Cco03g0900 831 ProSiteProfiles cAMP/cGMP binding motif profile. 405 525 IPR000595 -
Cco03g0900 831 ProSiteProfiles Ankyrin repeat profile. 615 647 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 ProSiteProfiles KHA domain profile. 758 831 IPR021789 -
Cco03g0900 831 FunFam Potassium channel KAT2 393 529 - -
Cco03g0900 831 PANTHER POTASSIUM CHANNEL AKT1 40 826 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cco03g0900 831 Gene3D - 648 743 IPR036770 -
Cco03g0900 831 SMART ANK_2a 712 741 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 SMART ANK_2a 679 708 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 SMART ANK_2a 615 644 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 SMART ANK_2a 582 611 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 SMART ANK_2a 646 675 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 SMART cnmp_10 405 523 IPR000595 -
Cco03g0900 831 Pfam Cyclic nucleotide-binding domain 425 509 IPR000595 -
Cco03g0900 831 PRINTS Ankyrin repeat signature 583 598 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 PRINTS Ankyrin repeat signature 695 709 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 SUPERFAMILY cAMP-binding domain-like 333 524 IPR018490 -
Cco03g0900 831 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515(InterPro)
Cco03g0900 831 Gene3D Jelly Rolls 389 530 IPR014710 -
Cco03g0900 831 ProSiteProfiles Ankyrin repeat region circular profile. 582 614 - -
Cco03g0900 831 FunFam Potassium channel SKOR 85 330 - -
Cco03g0900 831 Gene3D Helix hairpin bin 332 388 - -
Cco03g0900 831 Gene3D - 539 647 IPR036770 -
Cco03g0900 831 ProSiteProfiles Ankyrin repeat region circular profile. 679 711 - -
Cco03g0900 831 SUPERFAMILY Voltage-gated potassium channels 79 330 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0900 Cco-Chr3:11221898 Cco06g1242 Cco-Chr6:22383764 4.10E-88 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0900 K21867 - csv:101210912 1550.03