Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0908 ATGGGTTCTTTGCCTTCCGAAGCTTTGGCCGTCGAAATTACCGACACCCATATTCATACCGTCGCCGGTGCCGGCGCAGAAACCTCTGAATGGCTTCTCAATTCCCCCAACCCTCCAACTTTGTGGGAAGAAATTGTGGACGCCATCAAAGGAAATGCCGTTCCTCGAAGTTGCACAAAGACCCCCAACAAAAACACTTCTTCTTCTTCAAGCCCTGGAAAACAGAGCATTTTCAAAACCATACTTTCCCTTCTGCAGAGAGTGTTCCCGATCCTTAAATTGCCTCGAAATTACAAAGCCTCCAAGTTCAAAAACGACCTCATGGCTGGTTTAACACTCGCCAGTCTCAGCATCCCTCAGAGTATTGGGTATGCTAATTTGGCAAAGCTTGATCCTCAGTTCGGTCTCTATACAAGTGTTGTTCCTCCTTTGATTTATGCATTTATGGGGAGTTCGAGAGAGATAGCGATTGGACCGGTGGCTGTGGTTTCATTGCTTCTTTCGTCTATGCTTCAAGAAATTCAAGATCCTGTTGCAGACTCAGTTGCTTATAGAAGGCTTGTTTTCACTGTAACTTTATTTGCAGGGATTTTCCAAGCATCATTTGGACTCTTGAGACTGGGTTTTCTTGTGGACTTCCTATCTCATGCTGCCATTGTTGGGTTCATGGCTGGGGCTGCCATTCTCATTGGTCTTCAACAAATGAAAGGCTTACTTGCCATCAGCAACTTCACCACTAAAACTGATGTGGTTTCTGTTTTGGAGTCTGTGGTGAAATCTGTTCACCAGACTTGGTACCCTTTGAACATTGTACTTGGCTGCTCCTTCCTAATCTTTCTCCTTGTAGCCAGGTTCATAGGCAGAAGGAAGAAGAAGCTATTTTGGGTGTCAGCCATTGCTCCTCTCATATCAGTTATTCTCTCCACTTTGATAGTGTTTGTTTCAAGAGCTGACAAACATGGAGTTAAGATAGTGAAGGAAGTGAAAGAAGGACTGAACCCAATCTCCATTCATCAGCTTCAACTGAACAGCTCAACTGTTGGGTTAGCTGCAAAAGCTGGCCTCATTGCTGCCCTTATAGCTCTCACAGAAGCCATAGCAGTGGGCCGATCGTTCGCCTCGATTAAAGGCTACAGCATTGATGGGAACAAGGAGATGATAGCCATGGGATTGATGAACATAATAGGCTCTTTAACATCTTGTTACATAGCGACTGGGTCATTCTCAAGAACTGCTGTGAATTATAGTGCTGGATGTGAAAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGGTGACACTGCAATTTATGACTCGGTTTCTTTACTTTACTCCAATGGCCATTTTGGCTTCAATCATTCTCTCAGCTCTTCCTGGTCTCATTGACATTAATGAAGCTTTGAATATTTGGAAGGTTGATAAGCTTGACTTTCTTGCTTGTCTTGGCGCTTTCCTTGGTGTCTTGTTTCATTCGGTCGAATTTGGCCTTCTTGTAGCGGTTGGAATTTCATTTGCAAAGATATTGTTGATTTCAGTAAGACCAGCCACAGAAGAGGTGGGAAGGCTTCCAAGAAGTGACATGTTTTGCAACATGAAGCAATTTCCCATGGCCACCAAAACTCAAGGACTCTCCATTATCAGAATTAACTCTGCCTTGCTTTGTTTTGCCAATGCTAGTTTCATTAGAGACAGGATAATGAGATTGGTGGAAGATGATGATGATGATATTGAAGAAAAAACAGCAAAAGATCAACCTAAACAAGTAGTCGTTGACATGTGCAATGTTTTGAATATCGATACATCAGGAATCATTGCTTTAGAGGAACTTCACAAAAGGTTGTTGTTGCACGGCATTGAACTAACAATAGCCAGTCCAAAATGGGAAGTGATCCACAAACTAAAAAAGACAAACTTTGTTGAAAGAATTGAAGGAAGGGTTTTCCTATCAGTTGGTGAAGCTGTGGATTCCTGCCTTGGAAATGCTTCCAAATTGCCTTCTCCCTTACCAAAGTCATTGTGA 2025 42.72 MGSLPSEALAVEITDTHIHTVAGAGAETSEWLLNSPNPPTLWEEIVDAIKGNAVPRSCTKTPNKNTSSSSSPGKQSIFKTILSLLQRVFPILKLPRNYKASKFKNDLMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSVVPPLIYAFMGSSREIAIGPVAVVSLLLSSMLQEIQDPVADSVAYRRLVFTVTLFAGIFQASFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFTTKTDVVSVLESVVKSVHQTWYPLNIVLGCSFLIFLLVARFIGRRKKKLFWVSAIAPLISVILSTLIVFVSRADKHGVKIVKEVKEGLNPISIHQLQLNSSTVGLAAKAGLIAALIALTEAIAVGRSFASIKGYSIDGNKEMIAMGLMNIIGSLTSCYIATGSFSRTAVNYSAGCESVLSNIVMAITVMVTLQFMTRFLYFTPMAILASIILSALPGLIDINEALNIWKVDKLDFLACLGAFLGVLFHSVEFGLLVAVGISFAKILLISVRPATEEVGRLPRSDMFCNMKQFPMATKTQGLSIIRINSALLCFANASFIRDRIMRLVEDDDDDIEEKTAKDQPKQVVVDMCNVLNIDTSGIIALEELHKRLLLHGIELTIASPKWEVIHKLKKTNFVERIEGRVFLSVGEAVDSCLGNASKLPSPLPKSL 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11328490 11334924 - CcPI632755_03g009080.1 Cco03g0908 174267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0908 674 Pfam STAS domain 537 655 IPR002645 -
Cco03g0908 674 ProSiteProfiles STAS domain profile. 555 659 IPR002645 -
Cco03g0908 674 Pfam Sulfate permease family 103 483 IPR011547 GO:0016020(InterPro)
Cco03g0908 674 Gene3D STAS domain 515 661 IPR036513 -
Cco03g0908 674 SUPERFAMILY SpoIIaa-like 542 659 IPR036513 -
Cco03g0908 674 PANTHER SULFATE TRANSPORTER 79 660 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0908 674 CDD STAS_SulP_like_sulfate_transporter 536 650 - -
Cco03g0908 674 NCBIfam sulfate permease 90 652 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0908 674 ProSitePatterns SLC26A transporters signature. 132 153 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0908 Cco-Chr3:11328490 Cco09g1700 Cco-Chr9:28186202 2.20E-164 dispersed
Cco03g0908 Cco-Chr3:11328490 Cco03g0910 Cco-Chr3:11385321 2.80E-167 proximal
Cco07g1018 Cco-Chr7:23292179 Cco03g0908 Cco-Chr3:11328490 3.50E-223 transposed
Cco11g1584 Cco-Chr11:28730051 Cco03g0908 Cco-Chr3:11328490 8.30E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0908 K17469 - csv:101211892 1118.22