Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0910 ATGGACTCAAGAGGCCATTCCAATGGCAGAGAACTCGAAAAGAAGGAGATGGACATTAGAAGTCTTTCATCTTCACGCAACAATACACAGTGCATTCATAAGGTGGGGGTTCCACCAAAGCAAAATCTCTTCAAAGAATTTAAAGCCAGAGTGAAAGAGACTTTCTTCGCAGATGATCCTCTGCGAACCTTCAAGGACCAATCGAAGTCTCAAAAGTTGGTCCTGGGAATTCAGGCTATCTTCCCGATATTTGAATGGGGGAGGAGTTACAATCTGACTAAATTTAGAGGAGATATAATTGCTGGACTCACTATTGCAAGTTTGTGTATTCCACAGGATATAGGGTATGCAAAACTTGCTAATTTGGCTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTGGTTTATGCTTTAATGGGTAGCTCAAGAGACATAGCAATTGGACCCGTGGCTGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACGGCTACTTTTTTTGCTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCTATCTCACGCTGCCATTGTGGGTTTTATGGGTGGAGCTGCCATCACTATAGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAAGTTTACAAAGGAAACAGACATTATTTCTGTAATGCGCTCAGTATTCGAGGCAGCGCATCATGGATGGAACTGGCAGACAATAGTCATTGGAGTAGCTTTTCTATGTTTTCTTCTATTAGCCAAGTATATTGGAAAGAAAAATAAGAACCTTTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGTAGACCAGAAAGGTGTCGCAATCGTGAAACACATAGAGAAAGGAATCAATCCCTCATCAGTGAAGCAAATTTACTTCACCGGTGACAACCTCCTTAAAGGATTCAGGATTGGTGCAGTGGCTGGTATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTACCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTAGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCGTTCTCTCGCTCAGCTGTGAATTACATGTCTGGCTGTCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAATTCATCACGCCCCTTTTCAAGTACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATAAACTTGATCGACATTCAGGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTTTGGGAGCCTTCTTCGGTGTGATATTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTCGCTGTTCTCGGAAAGATCCCTAGGACTACAGTATACAGGAACACTCAACAGTATCCAGAAGCAACAAGGGTTCCTGGCATTCTCATTGTGAGAGTTGATTCTGCAATTTACTTTTCTAACTCCAATTACATCAAAGAGAGGATATTGAGATGGTTGGCAGATGAGGAAGAACAAAAAAAGAAGGCTTATTCAACAAATACTCAGTTTTTGATTGTTGAGATGTCTCCTGTTACCGACATTGACACTAGTGGAATTCATGCCTTGGAAGAGCTATACAGGAATCTCCAGAAACGAGACATTCAGCTTGTTTTGGCAAACCCTGGGCCGGTAGTGATTGACAAACTCCACGCATCCAATCTTGCTAATCTGATTGGGGAGGACCATATCTTTCTAACAGTTGCTGAAGCTGTCTCATCTTGCTCCCCAAAATTGGTGGAAGAAGCCTAG 1977 41.83 MDSRGHSNGRELEKKEMDIRSLSSSRNNTQCIHKVGVPPKQNLFKEFKARVKETFFADDPLRTFKDQSKSQKLVLGIQAIFPIFEWGRSYNLTKFRGDIIAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKETDIISVMRSVFEAAHHGWNWQTIVIGVAFLCFLLLAKYIGKKNKNLFWVPAIAPLISVILSTFFVYITHVDQKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGAVAGMIALTEAIAIGRTFATMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATRVPGILIVRVDSAIYFSNSNYIKERILRWLADEEEQKKKAYSTNTQFLIVEMSPVTDIDTSGIHALEELYRNLQKRDIQLVLANPGPVVIDKLHASNLANLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11385321 11389477 + CcPI632755_03g009100.1 Cco03g0910 174269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0910 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco03g0910 658 PANTHER SULFATE TRANSPORTER 50 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0910 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Cco03g0910 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Cco03g0910 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0910 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020(InterPro)
Cco03g0910 658 Gene3D STAS domain 507 653 IPR036513 -
Cco03g0910 658 FunFam Sulfate transporter 31 507 653 - -
Cco03g0910 658 Pfam STAS domain 528 646 IPR002645 -
Cco03g0910 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0910 Cco-Chr3:11385321 Cco11g1584 Cco-Chr11:28730051 8.70E-299 dispersed
Cco03g0908 Cco-Chr3:11328490 Cco03g0910 Cco-Chr3:11385321 2.80E-167 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0910 K17470 - csv:101212138 1215.68