Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0925 | ATGCCTCGGGTCACATATCCTGCTCGGAAACTGAGTCCGAGAACAAGTGATATGGCCGATGGAGAAGAACAGCAGGGTGAATGCTGGGGTGGCTCCACTGGGGCATCGGGTTTTGACTTGGGCAACAAAAGTTTTGGCATTGCAGATGTACGTTCGACGTCGATTGTAATTGTACAGAGTAAGATTTTTAGGAGTATTAGCCATTGTGTGTACGAGAAGTTGGGGAGAGGGGGAAAGGAAAGAGTTGCTGCTGTGAAGGTTTTTATTAGCTTCAACGCTTGCCAGGAACAAGATGAGGCCCAGGCCTCTGCTGCCTACGACGGTTTCCGAGCTCTGCCTCTGCATACGAAGCCCCAAGCCGCGATGGGCTCCATAGACGTCCAATCAACCAACGCTGAAAATGGATCCGCCGCCGCCTCTGCTGATGGTCGTCAAAAGCCAGTTCCCGCCGACGGTTTGAACCAGACATCTAACGAGCCAGACGGAACGGCGCCTGAGAAGCCTAAGGAATTGGGGCCGACGAAGAAGCGTATGTCCTCCATGCTTCCTCTAGATGTCGGCACCCGCGTCATGTGCCGCTGGAGGGACGGGAAGTACCATCCCGTTAAGGTCATCGAGCGTCGGAAGTTGCAGGCAACTGGTTTTAGTGACTACGAATACTATGTCCATTACACCGAGTTCAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGATCTTGATTCAGTTGAGACGGTTGTTGATGAGAAAGTGGAGGACAAGGTAACAGGGTTGAAGATGACCCGACACCAGAAGCGGAAGATTGATGAAACCCATGTTGAGGGTCATGAGGAACTTGATGCTGCCAGCTTGAGGGAGCATGAAGAATTTACGAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATACGAGATTGAGACATGGTATTTCTCCCCCTTTCCACCAGAGTACAATGACACTACAAAGCTCTATTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATTTATCGATGTGGTACTTTATCAATGTTTGAGGTTGATGGAAAAAAGAACAAGGTTTATGGGCAGAATCTCTGTTACCTAGCAAAGTTATTTCTGGACCACAAGACTCTCTACTATGATGTCGACCTTTTTCTGTTTTATGTCCTGTGCGAGTGTGATGATCGAGGGTGTCACATGGTTGGATATTTTTCAAAGGAAAAGCATTCAGAGGAATCCTATAATTTGGCATGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGCTACGGCAAGTTCTTAATAGCTTTTTCTTATGAACTCTCCAAGAAGGAAGGTAAAGTTGGCACTCCTGAAAGACCTCTTTCAGACCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGAGTTCTTTTAGACATCTTGAAAAAGCACAAGGCCAATATCTCTATCAAGGAGCTAAGTGACATGACAGCTATCAAAGCCGAAGATATTTTGAACACACTTCAGAGCCTGGAGTTGATTCAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCGAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGTCGTGGGGGCCTAGAGGTCGATGTTAGCAAATTGATCTGGACTCCATACAGAGAACAGGGTTGA | 1710 | 46.96 | MPRVTYPARKLSPRTSDMADGEEQQGECWGGSTGASGFDLGNKSFGIADVRSTSIVIVQSKIFRSISHCVYEKLGRGGKERVAAVKVFISFNACQEQDEAQASAAYDGFRALPLHTKPQAAMGSIDVQSTNAENGSAAASADGRQKPVPADGLNQTSNEPDGTAPEKPKELGPTKKRMSSMLPLDVGTRVMCRWRDGKYHPVKVIERRKLQATGFSDYEYYVHYTEFNRRLDEWVKLDQLDLDSVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKANISIKELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQG | 569 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 11779809 | 11789968 | - | CcPI632755_03g009250.1 | Cco03g0925 | 174284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0925 | 569 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Cco03g0925 | 569 | SUPERFAMILY | Chromo domain-like | 175 | 294 | IPR016197 | - | |
| Cco03g0925 | 569 | ProSiteProfiles | MYST-type histone acetyltransferase (HAT) domain profile. | 293 | 564 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| Cco03g0925 | 569 | FunFam | Histone acetyltransferase | 352 | 479 | - | - | |
| Cco03g0925 | 569 | FunFam | Histone acetyltransferase | 472 | 551 | - | - | |
| Cco03g0925 | 569 | Gene3D | - | 174 | 293 | - | - | |
| Cco03g0925 | 569 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 294 | 565 | IPR016181 | - | |
| Cco03g0925 | 569 | Gene3D | - | 352 | 564 | - | - | |
| Cco03g0925 | 569 | Pfam | RNA binding activity-knot of a chromodomain | 184 | 242 | IPR025995 | - | |
| Cco03g0925 | 569 | Gene3D | - | 472 | 552 | IPR036388 | - | |
| Cco03g0925 | 569 | SMART | chromo_7 | 198 | 257 | IPR000953 | - | |
| Cco03g0925 | 569 | Gene3D | - | 294 | 350 | - | - | |
| Cco03g0925 | 569 | Pfam | MOZ/SAS family | 354 | 531 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| Cco03g0925 | 569 | MobiDBLite | consensus disorder prediction | 131 | 180 | - | - | |
| Cco03g0925 | 569 | Pfam | MYST family zinc finger domain | 295 | 349 | IPR040706 | - | |
| Cco03g0925 | 569 | CDD | CBD_MOF_like | 187 | 256 | - | - | |
| Cco03g0925 | 569 | FunFam | Histone acetyltransferase | 292 | 349 | - | - | |
| Cco03g0925 | 569 | CDD | NAT_SF | 405 | 463 | - | - | |
| Cco03g0925 | 569 | PANTHER | HISTONE ACETYLTRANSFERASE | 146 | 565 | IPR050603 | GO:0000790(PANTHER)|GO:0003712(PANTHER)|GO:0045892(PANTHER)|GO:0045944(PANTHER) | |
| Cco03g0925 | 569 | FunFam | Histone acetyltransferase | 174 | 293 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0925 | K11308 | - | csv:101217824 | 898.656 |