Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0937 ATGGATCCGAGGAAAATCGCTGGGAAACCCAAGCTTGGCCGACTTAATGCGGCCAAGAACATTGACTATGATGCTACTTCCTCGTCTTCTTCGCTTGAAGATTCTTCTGGGTCTCTCTATACTCGCTCCATGGAGACCCCCGATCCCTCCAGTTTTCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACTTTAGGGCTAGATGGCCCTGACGACTTTGCTATTCCGATGGAGGCATGGGAGGCTAGAAAGGTTCGTTCATCTTCCGAGCTTCTACCGAGGTCGAGGCTGTATCCCATGGACACCTCCCCGAAGACCGAGGAGATTAGTAAGGATAAGGAAGATAAAGAAATCGAAGATGAATTGTGCCGGAGGGTTAAGGATTCAGTTCGAATTAGCGTCGAGCTGTCCACGCCTAAGTCGGAATTTCCAGAGTTGAATGAACGCCGGATGGCTACTGCTACTGGATGTAGTTCGAGAAGTGGAATCAATGGTGCTCGGCCTCCTTTACTCAAGCCACCGCCGTCGATGAGGCTTCCAAATTTGGAAAATACTTGCTCCACTTGGGACATTTTGAAAGCTTTTGCTCCATTAGTTGATGATGAACATCAGGAGGAAGTAGGAGAACGAGTGGAACCATTAGTTGAAGAAGAAGGAGAGGGAAATATTGTGAGGCCCGTGATGCGCATAGGGTCTTGGGGTTCCTTCACGACCTCGAATGACGATGATTCTTCGAGCAGTACTACGGAGCCTGCAAATATTTCACCCAATATGAGAGGTTGTCCCATTATCACATCCTGGGTGGTCGGCAGGCTTCTTGGACGCGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGATGGTACGTTCTTTGCACTGAAAGAAGTTTCACTGCTCGAGGATGATAGTCAGGGAAGACAAAGTATCGATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTACGGCACGCATTCGGATGGGTCAAAACTCTATATCTTCCTCGAGCTTGTATCTCAGGGCTCCCTTATGAGTCTATATCAAAGGACAATCCTTATGGACTCCATTGTTTCTGCCTACACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCGAAATGTGGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATAAAAATGGATCTGTGAAGCTCGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTGCATATTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATATGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACTCGAAAGCTTCCATATTCAGAACTCGAATCTCATATGCAAGCACTATTTAGGATTGGAAAAGGCAAACCGCCTGCAGTTCCCGAGTCTCTCCCAAAAGATGCACAGGATTTCATTCGGCAGTGCCTACAAGTTAATCCAAAGGACCGTCCTACTGCTGCTGATCTATTAAATCACTCGTTTGTGAGAAGACCAGTTTCCAGTTTATCAGGGTCGGCATCTCCTTACAACAGGCCAGGCAGAAGGATTTAA 1638 46.4 MDPRKIAGKPKLGRLNAAKNIDYDATSSSSSLEDSSGSLYTRSMETPDPSSFRIKGLDGEVDLICRTLGLDGPDDFAIPMEAWEARKVRSSSELLPRSRLYPMDTSPKTEEISKDKEDKEIEDELCRRVKDSVRISVELSTPKSEFPELNERRMATATGCSSRSGINGARPPLLKPPPSMRLPNLENTCSTWDILKAFAPLVDDEHQEEVGERVEPLVEEEGEGNIVRPVMRIGSWGSFTTSNDDDSSSSTTEPANISPNMRGCPIITSWVVGRLLGRGSFGSVYEAISEDGTFFALKEVSLLEDDSQGRQSIDQLQQEIALLSEFEHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRTILMDSIVSAYTRQILSGLKYLHERNVVHRDIKCANILVDKNGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSELESHMQALFRIGKGKPPAVPESLPKDAQDFIRQCLQVNPKDRPTAADLLNHSFVRRPVSSLSGSASPYNRPGRRI 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11998882 12004066 + CcPI632755_03g009370.1 Cco03g0937 174296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0937 545 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524(InterPro)
Cco03g0937 545 SUPERFAMILY Protein kinase-like (PK-like) 251 531 IPR011009 -
Cco03g0937 545 MobiDBLite consensus disorder prediction 21 48 - -
Cco03g0937 545 SMART serkin_6 270 524 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0937 545 PRINTS Tyrosine kinase catalytic domain signature 493 515 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0937 545 PRINTS Tyrosine kinase catalytic domain signature 348 361 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0937 545 PRINTS Tyrosine kinase catalytic domain signature 383 401 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0937 545 PRINTS Tyrosine kinase catalytic domain signature 449 471 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0937 545 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 105 526 IPR050538 -
Cco03g0937 545 Pfam Protein kinase domain 271 524 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0937 545 MobiDBLite consensus disorder prediction 157 180 - -
Cco03g0937 545 FunFam Mitogen-activated protein kinase 1, putative, expressed 268 536 - -
Cco03g0937 545 Gene3D Transferase(Phosphotransferase) domain 1 268 537 - -
Cco03g0937 545 ProSiteProfiles Protein kinase domain profile. 270 524 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0937 545 MobiDBLite consensus disorder prediction 18 51 - -
Cco03g0937 545 MobiDBLite consensus disorder prediction 237 258 - -
Cco03g0937 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0937 Cco-Chr3:11998882 Cco04g1293 Cco-Chr4:28210022 9.70E-62 dispersed
Cco03g0937 Cco-Chr3:11998882 Cco05g0981 Cco-Chr5:8613008 1.20E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86674 PF00069 Pkinase 3.50E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0937 K13414 - csv:101218538 958.747