Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0937 | ATGGATCCGAGGAAAATCGCTGGGAAACCCAAGCTTGGCCGACTTAATGCGGCCAAGAACATTGACTATGATGCTACTTCCTCGTCTTCTTCGCTTGAAGATTCTTCTGGGTCTCTCTATACTCGCTCCATGGAGACCCCCGATCCCTCCAGTTTTCGGATTAAAGGGCTTGACGGTGAAGTTGATCTCATATGTCGGACTTTAGGGCTAGATGGCCCTGACGACTTTGCTATTCCGATGGAGGCATGGGAGGCTAGAAAGGTTCGTTCATCTTCCGAGCTTCTACCGAGGTCGAGGCTGTATCCCATGGACACCTCCCCGAAGACCGAGGAGATTAGTAAGGATAAGGAAGATAAAGAAATCGAAGATGAATTGTGCCGGAGGGTTAAGGATTCAGTTCGAATTAGCGTCGAGCTGTCCACGCCTAAGTCGGAATTTCCAGAGTTGAATGAACGCCGGATGGCTACTGCTACTGGATGTAGTTCGAGAAGTGGAATCAATGGTGCTCGGCCTCCTTTACTCAAGCCACCGCCGTCGATGAGGCTTCCAAATTTGGAAAATACTTGCTCCACTTGGGACATTTTGAAAGCTTTTGCTCCATTAGTTGATGATGAACATCAGGAGGAAGTAGGAGAACGAGTGGAACCATTAGTTGAAGAAGAAGGAGAGGGAAATATTGTGAGGCCCGTGATGCGCATAGGGTCTTGGGGTTCCTTCACGACCTCGAATGACGATGATTCTTCGAGCAGTACTACGGAGCCTGCAAATATTTCACCCAATATGAGAGGTTGTCCCATTATCACATCCTGGGTGGTCGGCAGGCTTCTTGGACGCGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGATGGTACGTTCTTTGCACTGAAAGAAGTTTCACTGCTCGAGGATGATAGTCAGGGAAGACAAAGTATCGATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAGTACTACGGCACGCATTCGGATGGGTCAAAACTCTATATCTTCCTCGAGCTTGTATCTCAGGGCTCCCTTATGAGTCTATATCAAAGGACAATCCTTATGGACTCCATTGTTTCTGCCTACACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCGAAATGTGGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATAAAAATGGATCTGTGAAGCTCGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTGCATATTGGATGGCACCTGAGGTGGTTAATGGGAAGGGTCAAGGATATGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACTCGAAAGCTTCCATATTCAGAACTCGAATCTCATATGCAAGCACTATTTAGGATTGGAAAAGGCAAACCGCCTGCAGTTCCCGAGTCTCTCCCAAAAGATGCACAGGATTTCATTCGGCAGTGCCTACAAGTTAATCCAAAGGACCGTCCTACTGCTGCTGATCTATTAAATCACTCGTTTGTGAGAAGACCAGTTTCCAGTTTATCAGGGTCGGCATCTCCTTACAACAGGCCAGGCAGAAGGATTTAA | 1638 | 46.4 | MDPRKIAGKPKLGRLNAAKNIDYDATSSSSSLEDSSGSLYTRSMETPDPSSFRIKGLDGEVDLICRTLGLDGPDDFAIPMEAWEARKVRSSSELLPRSRLYPMDTSPKTEEISKDKEDKEIEDELCRRVKDSVRISVELSTPKSEFPELNERRMATATGCSSRSGINGARPPLLKPPPSMRLPNLENTCSTWDILKAFAPLVDDEHQEEVGERVEPLVEEEGEGNIVRPVMRIGSWGSFTTSNDDDSSSSTTEPANISPNMRGCPIITSWVVGRLLGRGSFGSVYEAISEDGTFFALKEVSLLEDDSQGRQSIDQLQQEIALLSEFEHENIVQYYGTHSDGSKLYIFLELVSQGSLMSLYQRTILMDSIVSAYTRQILSGLKYLHERNVVHRDIKCANILVDKNGSVKLADFGLAKATKLNDVKSCKGTAYWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSELESHMQALFRIGKGKPPAVPESLPKDAQDFIRQCLQVNPKDRPTAADLLNHSFVRRPVSSLSGSASPYNRPGRRI | 545 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11998882 | 12004066 | + | CcPI632755_03g009370.1 | Cco03g0937 | 174296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0937 | 545 | ProSitePatterns | Protein kinases ATP-binding region signature. | 276 | 298 | IPR017441 | GO:0005524(InterPro) | |
Cco03g0937 | 545 | SUPERFAMILY | Protein kinase-like (PK-like) | 251 | 531 | IPR011009 | - | |
Cco03g0937 | 545 | MobiDBLite | consensus disorder prediction | 21 | 48 | - | - | |
Cco03g0937 | 545 | SMART | serkin_6 | 270 | 524 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0937 | 545 | PRINTS | Tyrosine kinase catalytic domain signature | 493 | 515 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0937 | 545 | PRINTS | Tyrosine kinase catalytic domain signature | 348 | 361 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0937 | 545 | PRINTS | Tyrosine kinase catalytic domain signature | 383 | 401 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0937 | 545 | PRINTS | Tyrosine kinase catalytic domain signature | 449 | 471 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0937 | 545 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 105 | 526 | IPR050538 | - | |
Cco03g0937 | 545 | Pfam | Protein kinase domain | 271 | 524 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0937 | 545 | MobiDBLite | consensus disorder prediction | 157 | 180 | - | - | |
Cco03g0937 | 545 | FunFam | Mitogen-activated protein kinase 1, putative, expressed | 268 | 536 | - | - | |
Cco03g0937 | 545 | Gene3D | Transferase(Phosphotransferase) domain 1 | 268 | 537 | - | - | |
Cco03g0937 | 545 | ProSiteProfiles | Protein kinase domain profile. | 270 | 524 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0937 | 545 | MobiDBLite | consensus disorder prediction | 18 | 51 | - | - | |
Cco03g0937 | 545 | MobiDBLite | consensus disorder prediction | 237 | 258 | - | - | |
Cco03g0937 | 545 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 389 | 401 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0937 | Cco-Chr3:11998882 | Cco04g1293 | Cco-Chr4:28210022 | 9.70E-62 | dispersed | |
Cco03g0937 | Cco-Chr3:11998882 | Cco05g0981 | Cco-Chr5:8613008 | 1.20E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86674 | PF00069 | Pkinase | 3.50E-71 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0937 | K13414 | - | csv:101218538 | 958.747 |