Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0954 | ATGGCATCTGCCATGGCCAAACCCAAAATACAGAGAAAGCTCAGCAGACAGAGCCATGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCTGTTGTTAAAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAGCAGCAGCAGCAACAACAACATCATCAATTACCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACTGCAAGAAAATGAGATGTTCAGGTTCACTCTGTAGCAACACCAAGATAACACACAGGCTTGAAGCAGCTGCATCCCCAGAAGTTCACAAGAAAAGGGTCTTGACTTCCAGAAACAATGAATCTTCAAGTTCAAGTAGATCCAGCAAAGCTCCTCCTTTGAATGAACAAACTGGAGTTGTATCAGCCACATGTTCATCATTATCTGCATCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGATTTTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAACAACTATTTGCCCTTGTCCTGAATGTGGTGAGATCTTCATGAAACCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTTTCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGATTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAATACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCATTGCACAACCCTGGGTTGTTCATTGGGCCTAAATGGCTCTTCAAACCTCTGTAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGGTGGCTGCAGAGGCTACCGGAGGGGAAGCAGGAAAGGGGATTCTAACAACCGCTACCAGTGGAAAGGCTCATGATAGTGCGGGAGTATCATCGGAGTCCGGCAACGGCAACGATAAACGAGCAATGCTGGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGAAGCATGGAAGATTACGACTCATTGGCGGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGTTTTTAA | 1278 | 44.44 | MASAMAKPKIQRKLSRQSHENQKPKPPSWAVVKGIFSCKYLQPQQQQQQQHHQLPRKEKQQEQATEEISKNCKKMRCSGSLCSNTKITHRLEAAASPEVHKKRVLTSRNNESSSSSRSSKAPPLNEQTGVVSATCSSLSASSSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRTTICPCPECGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKVAAEATGGEAGKGILTTATSGKAHDSAGVSSESGNGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF | 425 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12548368 | 12549730 | + | CcPI632755_03g009540.1 | Cco03g0954 | 174313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0954 | 425 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 189 | 217 | IPR013087 | - | |
| Cco03g0954 | 425 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 28 | 422 | - | - | |
| Cco03g0954 | 425 | Gene3D | - | 213 | 423 | - | - | |
| Cco03g0954 | 425 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
| Cco03g0954 | 425 | MobiDBLite | consensus disorder prediction | 93 | 107 | - | - | |
| Cco03g0954 | 425 | MobiDBLite | consensus disorder prediction | 52 | 69 | - | - | |
| Cco03g0954 | 425 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 189 | 212 | IPR013087 | - | |
| Cco03g0954 | 425 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cco03g0954 | 425 | SUPERFAMILY | ADP-ribosylation | 214 | 423 | - | - | |
| Cco03g0954 | 425 | MobiDBLite | consensus disorder prediction | 93 | 126 | - | - | |
| Cco03g0954 | 425 | MobiDBLite | consensus disorder prediction | 108 | 126 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0954 | Cco-Chr3:12548368 | Cco05g2076 | Cco-Chr5:29744977 | 7.50E-86 | dispersed | |
| Cco03g0954 | Cco-Chr3:12548368 | Cco03g0958 | Cco-Chr3:12617123 | 1.70E-53 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 58945 | None | None | None | None | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0954 | - | - | - | 0.0 |