Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0954 ATGGCATCTGCCATGGCCAAACCCAAAATACAGAGAAAGCTCAGCAGACAGAGCCATGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCTGTTGTTAAAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAGCAGCAGCAGCAACAACAACATCATCAATTACCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACTGCAAGAAAATGAGATGTTCAGGTTCACTCTGTAGCAACACCAAGATAACACACAGGCTTGAAGCAGCTGCATCCCCAGAAGTTCACAAGAAAAGGGTCTTGACTTCCAGAAACAATGAATCTTCAAGTTCAAGTAGATCCAGCAAAGCTCCTCCTTTGAATGAACAAACTGGAGTTGTATCAGCCACATGTTCATCATTATCTGCATCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGATTTTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAACAACTATTTGCCCTTGTCCTGAATGTGGTGAGATCTTCATGAAACCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTTTCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGATTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAATACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCATTGCACAACCCTGGGTTGTTCATTGGGCCTAAATGGCTCTTCAAACCTCTGTAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGGTGGCTGCAGAGGCTACCGGAGGGGAAGCAGGAAAGGGGATTCTAACAACCGCTACCAGTGGAAAGGCTCATGATAGTGCGGGAGTATCATCGGAGTCCGGCAACGGCAACGATAAACGAGCAATGCTGGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGAAGCATGGAAGATTACGACTCATTGGCGGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGTTTTTAA 1278 44.44 MASAMAKPKIQRKLSRQSHENQKPKPPSWAVVKGIFSCKYLQPQQQQQQQHHQLPRKEKQQEQATEEISKNCKKMRCSGSLCSNTKITHRLEAAASPEVHKKRVLTSRNNESSSSSRSSKAPPLNEQTGVVSATCSSLSASSSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRTTICPCPECGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKVAAEATGGEAGKGILTTATSGKAHDSAGVSSESGNGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 425
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 12548368 12549730 + CcPI632755_03g009540.1 Cco03g0954 174313
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0954 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 217 IPR013087 -
Cco03g0954 425 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 422 - -
Cco03g0954 425 Gene3D - 213 423 - -
Cco03g0954 425 MobiDBLite consensus disorder prediction 42 69 - -
Cco03g0954 425 MobiDBLite consensus disorder prediction 93 107 - -
Cco03g0954 425 MobiDBLite consensus disorder prediction 52 69 - -
Cco03g0954 425 ProSitePatterns Zinc finger C2H2 type domain signature. 189 212 IPR013087 -
Cco03g0954 425 MobiDBLite consensus disorder prediction 1 28 - -
Cco03g0954 425 SUPERFAMILY ADP-ribosylation 214 423 - -
Cco03g0954 425 MobiDBLite consensus disorder prediction 93 126 - -
Cco03g0954 425 MobiDBLite consensus disorder prediction 108 126 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0954 Cco-Chr3:12548368 Cco05g2076 Cco-Chr5:29744977 7.50E-86 dispersed
Cco03g0954 Cco-Chr3:12548368 Cco03g0958 Cco-Chr3:12617123 1.70E-53 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58945 None None None None Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0954 - - - 0.0