Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0995 ATGGTAGCTCTCACGTTAGCCACCACGCAGCCAGTCGACCGCCGCACCAACTGCCCTTGTGTGCTGGTCGTTGCCGCCGTTTGGTCGACCGCCGTTTTGCAGCACTGTTCACTGCCGTTCGGTCACTGTCGTGTCCCTACATCGACGTGGCACATTAGGAATATGATTGAAAAGGAATTTTTTACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGTAGAGGGAGCTATGGAGTTGTTGCGTCTGCCATAGACACTCATTCTGGTGAAAAAGTTGCCATCAAGAAGATAAATAATGTCTTTGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTTCGGTTTCTTCGGCATCCTGATATTGTTGACATAAAACATATAATGCTCCCTCCATCCAGGAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGACGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCTCATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCGCGTGCATCTTTCAGTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTTGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCTGAAATGCTGTCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTCGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAGAAGGCCAAAAGGTATTTGAGTGGTATGAGAAAAAAGAATCCTATACCTCTTTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTTCTTGCATTTAATCCTGAGGACCGTCCTTCTGCGGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCCAGGGGACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAAGAGTACCTTCAAGGTTCTGGGAGTCACTTTCTGTATCCTAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTTTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATTCACCAAGAGATGAAGATGATGATGATGAAAAACGTAAAATAGAACAGCGAAATGCAGCTTCGGCTGAACGTGCAGCGCTTCGAAGCCCTCCTGGACCTGCTTATCCATTAACTGCTGGAAACGGTTCTGTTCAAGTAGATTGCAATAGTTATAACCTGTTGAGGAGTGCTAGTATAAATTGTTCTAAATGGGTGGATTAA 1587 42.6 MVALTLATTQPVDRRTNCPCVLVVAAVWSTAVLQHCSLPFGHCRVPTSTWHIRNMIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIMLPPSRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSSKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFNPEDRPSAEEALADPYFHGLANLKDEPSRGPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFLYPSGIDRFKRQFDHLEERSGKGERGSPLLRKHASLPRERIYSPRDEDDDDEKRKIEQRNAASAERAALRSPPGPAYPLTAGNGSVQVDCNSYNLLRSASINCSKWVD 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15005752 15010319 + CcPI632755_03g009950.1 Cco03g0995 174354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0995 528 MobiDBLite consensus disorder prediction 438 500 - -
Cco03g0995 528 Gene3D Phosphorylase Kinase; domain 1 86 407 - -
Cco03g0995 528 Pfam Protein kinase domain 70 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0995 528 SUPERFAMILY Protein kinase-like (PK-like) 67 366 IPR011009 -
Cco03g0995 528 ProSitePatterns Protein kinases ATP-binding region signature. 76 100 IPR017441 GO:0005524(InterPro)
Cco03g0995 528 FunFam Mitogen-activated protein kinase 385 407 - -
Cco03g0995 528 ProSitePatterns MAP kinase signature. 105 208 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0995 528 MobiDBLite consensus disorder prediction 438 481 - -
Cco03g0995 528 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 67 402 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco03g0995 528 FunFam Mitogen-activated protein kinase 156 384 - -
Cco03g0995 528 ProSiteProfiles Protein kinase domain profile. 70 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0995 528 SMART serkin_6 70 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0995 528 Gene3D Transferase(Phosphotransferase) domain 1 156 384 - -
Cco03g0995 528 CDD STKc_TDY_MAPK 69 406 - -
Cco03g0995 528 FunFam Mitogen-activated protein kinase 57 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0995 Cco-Chr3:15005752 Cco07g0716 Cco-Chr7:13272636 5.20E-254 dispersed
Cco03g0995 Cco-Chr3:15005752 Cco06g1633 Cco-Chr6:26950374 4.90E-212 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86676 PF00069 Pkinase 3.70E-67 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0995 - - - 0.0