Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0995 | ATGGTAGCTCTCACGTTAGCCACCACGCAGCCAGTCGACCGCCGCACCAACTGCCCTTGTGTGCTGGTCGTTGCCGCCGTTTGGTCGACCGCCGTTTTGCAGCACTGTTCACTGCCGTTCGGTCACTGTCGTGTCCCTACATCGACGTGGCACATTAGGAATATGATTGAAAAGGAATTTTTTACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGTAGAGGGAGCTATGGAGTTGTTGCGTCTGCCATAGACACTCATTCTGGTGAAAAAGTTGCCATCAAGAAGATAAATAATGTCTTTGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTTCGGTTTCTTCGGCATCCTGATATTGTTGACATAAAACATATAATGCTCCCTCCATCCAGGAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGACGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCTCATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCGCGTGCATCTTTCAGTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTTGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCTGAAATGCTGTCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTCGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAGAAGGCCAAAAGGTATTTGAGTGGTATGAGAAAAAAGAATCCTATACCTCTTTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTTCTTGCATTTAATCCTGAGGACCGTCCTTCTGCGGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCCAGGGGACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAAGAGTACCTTCAAGGTTCTGGGAGTCACTTTCTGTATCCTAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTTTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATTCACCAAGAGATGAAGATGATGATGATGAAAAACGTAAAATAGAACAGCGAAATGCAGCTTCGGCTGAACGTGCAGCGCTTCGAAGCCCTCCTGGACCTGCTTATCCATTAACTGCTGGAAACGGTTCTGTTCAAGTAGATTGCAATAGTTATAACCTGTTGAGGAGTGCTAGTATAAATTGTTCTAAATGGGTGGATTAA | 1587 | 42.6 | MVALTLATTQPVDRRTNCPCVLVVAAVWSTAVLQHCSLPFGHCRVPTSTWHIRNMIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIMLPPSRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSSKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFNPEDRPSAEEALADPYFHGLANLKDEPSRGPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFLYPSGIDRFKRQFDHLEERSGKGERGSPLLRKHASLPRERIYSPRDEDDDDEKRKIEQRNAASAERAALRSPPGPAYPLTAGNGSVQVDCNSYNLLRSASINCSKWVD | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15005752 | 15010319 | + | CcPI632755_03g009950.1 | Cco03g0995 | 174354 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0995 | 528 | MobiDBLite | consensus disorder prediction | 438 | 500 | - | - | |
Cco03g0995 | 528 | Gene3D | Phosphorylase Kinase; domain 1 | 86 | 407 | - | - | |
Cco03g0995 | 528 | Pfam | Protein kinase domain | 70 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0995 | 528 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 366 | IPR011009 | - | |
Cco03g0995 | 528 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 100 | IPR017441 | GO:0005524(InterPro) | |
Cco03g0995 | 528 | FunFam | Mitogen-activated protein kinase | 385 | 407 | - | - | |
Cco03g0995 | 528 | ProSitePatterns | MAP kinase signature. | 105 | 208 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0995 | 528 | MobiDBLite | consensus disorder prediction | 438 | 481 | - | - | |
Cco03g0995 | 528 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 67 | 402 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Cco03g0995 | 528 | FunFam | Mitogen-activated protein kinase | 156 | 384 | - | - | |
Cco03g0995 | 528 | ProSiteProfiles | Protein kinase domain profile. | 70 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0995 | 528 | SMART | serkin_6 | 70 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0995 | 528 | Gene3D | Transferase(Phosphotransferase) domain 1 | 156 | 384 | - | - | |
Cco03g0995 | 528 | CDD | STKc_TDY_MAPK | 69 | 406 | - | - | |
Cco03g0995 | 528 | FunFam | Mitogen-activated protein kinase | 57 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0995 | Cco-Chr3:15005752 | Cco07g0716 | Cco-Chr7:13272636 | 5.20E-254 | dispersed | |
Cco03g0995 | Cco-Chr3:15005752 | Cco06g1633 | Cco-Chr6:26950374 | 4.90E-212 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86676 | PF00069 | Pkinase | 3.70E-67 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0995 | - | - | - | 0.0 |