Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1000 | ATGGACGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCGCCCTCCGCTACGGCGGAGGCTGAGTCCCGTAAACTTCCTTCTTCCCGTTTCAAAGGAGTCGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTCAACGAAGAACACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACCACGCCGCTGTCGAGGCCGACTTTCTCAACTCCCACTCTAAGCTCGAGATCGTGGACATGCTCCGCAAACACACCTACAATGACGAACTCCAGCAGAGCAAACGCCAGAGGGGGCCCACGACGGCGGATTCAGCCTCCGGAACGTCCCCTAATTACTCCGGGTGGGATTCGAAGAGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGTTCTGGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGCTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTAGGTTCCTCCGCTCCACCGGCCCAGATAAGCAGCTTTACATCCATGCTAACCCCACCCCTGGACCGGCAATTAACCCGGTTCATGTTGTCAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGACAGAAGGGGTATTCTTGGAATTACAACCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA | 951 | 54.57 | MDASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDHAAVEADFLNSHSKLEIVDMLRKHTYNDELQQSKRQRGPTTADSASGTSPNYSGWDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVVLGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPAINPVHVVKLFGVNILQLPVGKTEGVFLELQPTKKQRIIKPL | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15226349 | 15227299 | - | CcPI632755_03g010000.1 | Cco03g1000 | 174359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1000 | 316 | CDD | B3_DNA | 167 | 267 | IPR003340 | GO:0003677(InterPro) | |
Cco03g1000 | 316 | SMART | rav1_2 | 44 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco03g1000 | 316 | FunFam | AP2 domain-containing protein RAP2.8 | 43 | 100 | - | - | |
Cco03g1000 | 316 | Gene3D | AP2/ERF domain | 43 | 100 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco03g1000 | 316 | ProSiteProfiles | B3 DNA-binding domain profile. | 168 | 272 | IPR003340 | GO:0003677(InterPro) | |
Cco03g1000 | 316 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 43 | 271 | IPR044800 | GO:0003700(InterPro) | |
Cco03g1000 | 316 | MobiDBLite | consensus disorder prediction | 137 | 158 | - | - | |
Cco03g1000 | 316 | SUPERFAMILY | DNA-binding pseudobarrel domain | 166 | 266 | IPR015300 | - | |
Cco03g1000 | 316 | Gene3D | - | 158 | 274 | IPR015300 | - | |
Cco03g1000 | 316 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco03g1000 | 316 | CDD | AP2 | 43 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco03g1000 | 316 | SMART | B3_2 | 168 | 270 | IPR003340 | GO:0003677(InterPro) | |
Cco03g1000 | 316 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cco03g1000 | 316 | SUPERFAMILY | DNA-binding domain | 43 | 99 | IPR016177 | GO:0003677(InterPro) | |
Cco03g1000 | 316 | MobiDBLite | consensus disorder prediction | 133 | 158 | - | - | |
Cco03g1000 | 316 | Pfam | B3 DNA binding domain | 168 | 262 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1000 | Cco-Chr3:15226349 | Cco05g2568 | Cco-Chr5:33928450 | 6.00E-104 | dispersed | |
Cco03g1000 | Cco-Chr3:15226349 | Cco01g0128 | Cco-Chr1:1127062 | 6.50E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58948 | PF02362 | B3 | 1.60E-27 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1000 | K09287 | - | csv:101206328 | 566.614 |