Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1000 ATGGACGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCGCCCTCCGCTACGGCGGAGGCTGAGTCCCGTAAACTTCCTTCTTCCCGTTTCAAAGGAGTCGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTCAACGAAGAACACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACCACGCCGCTGTCGAGGCCGACTTTCTCAACTCCCACTCTAAGCTCGAGATCGTGGACATGCTCCGCAAACACACCTACAATGACGAACTCCAGCAGAGCAAACGCCAGAGGGGGCCCACGACGGCGGATTCAGCCTCCGGAACGTCCCCTAATTACTCCGGGTGGGATTCGAAGAGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGTTCTGGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGCTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTAGGTTCCTCCGCTCCACCGGCCCAGATAAGCAGCTTTACATCCATGCTAACCCCACCCCTGGACCGGCAATTAACCCGGTTCATGTTGTCAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGACAGAAGGGGTATTCTTGGAATTACAACCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA 951 54.57 MDASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDHAAVEADFLNSHSKLEIVDMLRKHTYNDELQQSKRQRGPTTADSASGTSPNYSGWDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVVLGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPAINPVHVVKLFGVNILQLPVGKTEGVFLELQPTKKQRIIKPL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15226349 15227299 - CcPI632755_03g010000.1 Cco03g1000 174359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1000 316 CDD B3_DNA 167 267 IPR003340 GO:0003677(InterPro)
Cco03g1000 316 SMART rav1_2 44 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1000 316 FunFam AP2 domain-containing protein RAP2.8 43 100 - -
Cco03g1000 316 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1000 316 ProSiteProfiles B3 DNA-binding domain profile. 168 272 IPR003340 GO:0003677(InterPro)
Cco03g1000 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 271 IPR044800 GO:0003700(InterPro)
Cco03g1000 316 MobiDBLite consensus disorder prediction 137 158 - -
Cco03g1000 316 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cco03g1000 316 Gene3D - 158 274 IPR015300 -
Cco03g1000 316 ProSiteProfiles AP2/ERF domain profile. 44 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1000 316 CDD AP2 43 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1000 316 SMART B3_2 168 270 IPR003340 GO:0003677(InterPro)
Cco03g1000 316 MobiDBLite consensus disorder prediction 1 23 - -
Cco03g1000 316 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677(InterPro)
Cco03g1000 316 MobiDBLite consensus disorder prediction 133 158 - -
Cco03g1000 316 Pfam B3 DNA binding domain 168 262 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1000 Cco-Chr3:15226349 Cco05g2568 Cco-Chr5:33928450 6.00E-104 dispersed
Cco03g1000 Cco-Chr3:15226349 Cco01g0128 Cco-Chr1:1127062 6.50E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58948 PF02362 B3 1.60E-27 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1000 K09287 - csv:101206328 566.614