Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1004 | ATGCAGCAAAGTTGGAAGTTGAGTTGCATATCATCAAGTGACAGTGGATGTTTGGAGGTTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCCCCTCCTGGCCAACGCCATTCATTCTCTTCCAAACAACAACAACAACAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCCTCCGCCCCTGCGGTCCGCCCCCTCGACGCCGCACACTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGCTCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAAACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGAAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACACAAAAGATCCCTGAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTCCAACTTTGTGAGGTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAACCCTGGTCCATTTATCATTAA | 843 | 46.26 | MQQSWKLSCISSSDSGCLEVDEEGEESIFLSLSPPGQRHSFSSKQQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSSAPAVRPLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVCEVEDDDDWDDHDDDDHINGPQPWSIYH | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15600211 | 15601520 | - | CcPI632755_03g010040.1 | Cco03g1004 | 174363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1004 | 280 | MobiDBLite | consensus disorder prediction | 33 | 59 | - | - | |
Cco03g1004 | 280 | SUPERFAMILY | beta-beta-alpha zinc fingers | 101 | 129 | IPR036236 | - | |
Cco03g1004 | 280 | SUPERFAMILY | beta-beta-alpha zinc fingers | 174 | 211 | IPR036236 | - | |
Cco03g1004 | 280 | Gene3D | Classic Zinc Finger | 105 | 128 | - | - | |
Cco03g1004 | 280 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 133 | IPR013087 | - | |
Cco03g1004 | 280 | FunFam | Zinc finger protein WIP2 | 160 | 242 | - | - | |
Cco03g1004 | 280 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 190 | 214 | - | - | |
Cco03g1004 | 280 | PANTHER | ZINC FINGER PROTEIN WIP2 | 85 | 264 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Cco03g1004 | 280 | Gene3D | Classic Zinc Finger | 146 | 237 | - | - | |
Cco03g1004 | 280 | SMART | c2h2final6 | 106 | 128 | IPR013087 | - | |
Cco03g1004 | 280 | SMART | c2h2final6 | 154 | 186 | IPR013087 | - | |
Cco03g1004 | 280 | SMART | c2h2final6 | 191 | 211 | IPR013087 | - | |
Cco03g1004 | 280 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 128 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1004 | Cco-Chr3:15600211 | Cco10g1704 | Cco-Chr10:30590448 | 9.40E-85 | dispersed | |
Cco03g1004 | Cco-Chr3:15600211 | Cco02g2486 | Cco-Chr2:37194600 | 1.20E-84 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58949 | PF00096 | zf-C2H2 | 0.009 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1004 | - | - | - | 0.0 |