Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1004 ATGCAGCAAAGTTGGAAGTTGAGTTGCATATCATCAAGTGACAGTGGATGTTTGGAGGTTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCCCCTCCTGGCCAACGCCATTCATTCTCTTCCAAACAACAACAACAACAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCCTCCGCCCCTGCGGTCCGCCCCCTCGACGCCGCACACTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGCTCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAAACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGAAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACACAAAAGATCCCTGAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTCCAACTTTGTGAGGTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAACCCTGGTCCATTTATCATTAA 843 46.26 MQQSWKLSCISSSDSGCLEVDEEGEESIFLSLSPPGQRHSFSSKQQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSSAPAVRPLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVCEVEDDDDWDDHDDDDHINGPQPWSIYH 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15600211 15601520 - CcPI632755_03g010040.1 Cco03g1004 174363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1004 280 MobiDBLite consensus disorder prediction 33 59 - -
Cco03g1004 280 SUPERFAMILY beta-beta-alpha zinc fingers 101 129 IPR036236 -
Cco03g1004 280 SUPERFAMILY beta-beta-alpha zinc fingers 174 211 IPR036236 -
Cco03g1004 280 Gene3D Classic Zinc Finger 105 128 - -
Cco03g1004 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Cco03g1004 280 FunFam Zinc finger protein WIP2 160 242 - -
Cco03g1004 280 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 190 214 - -
Cco03g1004 280 PANTHER ZINC FINGER PROTEIN WIP2 85 264 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cco03g1004 280 Gene3D Classic Zinc Finger 146 237 - -
Cco03g1004 280 SMART c2h2final6 106 128 IPR013087 -
Cco03g1004 280 SMART c2h2final6 154 186 IPR013087 -
Cco03g1004 280 SMART c2h2final6 191 211 IPR013087 -
Cco03g1004 280 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1004 Cco-Chr3:15600211 Cco10g1704 Cco-Chr10:30590448 9.40E-85 dispersed
Cco03g1004 Cco-Chr3:15600211 Cco02g2486 Cco-Chr2:37194600 1.20E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58949 PF00096 zf-C2H2 0.009 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1004 - - - 0.0