Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1032 ATGGAATTCCGCTGTGGCTTCATCTTCTTCCTCTTGATTTGTTCATCTGTGGCTTTTCAATCCGAAGAGCTTCTCGTTGATGATGACGAGTTTGAAGGGACACAGCAGATTCAGTATATCGACGCCGCTCATACCCGATCCACACCTCCTCCAAGCCGTCCGACATCGACTAGGAGGCGATTTTCTGATCCTGATTCGGATTCTAAGGTCCAATTTCAGCTAGAGCACTCATTTGGGGACTCTGATTTCGCTCCTGCTGGCTTATTTACTGCACGTCTGAAGACTTCGAGCCATGGTGGTCAGTCACTTACAAAGCTGCGGTTTTCAAGAAATGCTTTTACTGAAGAGGATAGGAAGAAGTTCATGACCTTGTTGCAAGAAGATGGTTTCTACAGTGTAAGATTGGCAACAAATGTTTTGAAGTCAACGGGAGAGAGCTATGTTTACTCATCAGTGAAAGCAAGATGTCTTCCGCGAGTAGAGTTGGATGAACATTTTGTCATTCACATGGATGGTGTTAATATTTTGGCTGTTAATTACGGCACTCCTGGTGCATGCCCTTTTCCCAGACAACTGAAACTTCCTTCAAAATGGTCTTTTAACTCTCTCACATTTTTGAAGAGCGGCGAGCAGGCTCCAAGAACTCCTGTATTGGCTGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCAGGACAAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGCGGACCAGGTTCTTCTGCAATTAAGATAAGTTCCTTGCTGATGGTCCCTATGGATGATTCGGGTAAACACCCTGCAGCTTCTCCTCGAGTGCCCCTTGATGAGCACGGCCAAGACGTAGCGTAA 990 46.06 MEFRCGFIFFLLICSSVAFQSEELLVDDDEFEGTQQIQYIDAAHTRSTPPPSRPTSTRRRFSDPDSDSKVQFQLEHSFGDSDFAPAGLFTARLKTSSHGGQSLTKLRFSRNAFTEEDRKKFMTLLQEDGFYSVRLATNVLKSTGESYVYSSVKARCLPRVELDEHFVIHMDGVNILAVNYGTPGACPFPRQLKLPSKWSFNSLTFLKSGEQAPRTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQAAGQAQPQQSAAAIQRGPGSSAIKISSLLMVPMDDSGKHPAASPRVPLDEHGQDVA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17754874 17776679 - CcPI632755_03g010320.1 Cco03g1032 174391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1032 329 MobiDBLite consensus disorder prediction 39 65 - -
Cco03g1032 329 MobiDBLite consensus disorder prediction 39 57 - -
Cco03g1032 329 MobiDBLite consensus disorder prediction 307 329 - -
Cco03g1032 329 PANTHER CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED 5 276 IPR051754 -
Cco03g1032 329 CDD EMC10 70 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1032 K23570 - - csv:101203960 520.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g883 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0588 Cone3ag0615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g00982 Cam03g1036 Cec03g1033 Cco03g1032 Clacu03g1014 Cmu03g1600 Cre03g1303 Lsi06g00675 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010535 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32