Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1057 ATGGGGTCCTGCTTGTCTGCAGGAAGTAAGGAGGTCATTACTGGTTCGTCTGTATCTCCTGTGTTGGGAGCAAGTAAACAGAAAGACTCAGACAATGTGTTTGAGCAGCAGAATCAGGGTGAAGCGACAGTACACAGAATTCCTGGTAGGATGTTCTTGAATGGGTCCAGTGAAGTTGCTTCACTTCATACTCAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGATTGTATGGGAGAATTTTGGCTCCAGAACAGATACATTCTTTTGTGGAGTTTTTGATGGCCATGGTCCTTATGGTCATCTGGTCGCAAAAAGAGTGAGGGATTCTCTTCCCCTGAAACTGACTGCACATTGGGAAGCTAATGAAGACATTTCAGAAGAGTTAGGTTGTAAAGCAGAAGCTGTTAACAATGAAGATTCTACCTTAGAAATTAGTTGGAAGGAAGCTAGTTCTCCCCTTACGCAGCCAGAAATTTCTGAAAAACTGAAGGAATCATTTCTGAAGGCTTTTCAGATAATGGATGGAGAACTCAAAATTCAACCAAGTATTGATTGCTTCTGTAGTGGGACAACAGCAGTAGCTCTTGTTAAGCAGGGTCGAGATCTTGTTATTGGAAACGTCGGGGACTCTCGGGCTGTGCTGGGTACCAGAGATGAGGATAATTCTCTCCAAGCGGTTCAATTGACCATAGATCTCAAGCCAGATATTCCAGGGGAAGCTGAGAGAATTCTCAAATGCAAAGGTCGGGTATTTGCTCATCAGGATGAACCAGAAGTTGCTAGAGTATGGCTTCCAAACAATGATTCCCCCGGGCTGGCGATGGCTCGATCTTTTGGAGACTTTTGCCTCAAGGATTTCGGTCTAATTTCTGTTCCTGAAATATCATATCGTTTTCTATCTGACAAGGACGAGTTTATAGTTTTAGCTACAGACGGAATTTGGGATGTTCTTTCAAACAAAGAGGTAGTTGACATTGTAGCATCAGCCCCAGCTCGTTGTGCAGCCCGGTCATTGGTTGAGTCTGCAACTGAAGCATGGAGATGCAAGCTTCCTTCTTCCAACATTGACGACTGTGCCGTTGTCTGTCTCTTCCTCGACTCGAACTTGAACGTTATGGCATCAGAGACAAATATTAAATACAAGGAGGTTAAATCAGCAATCCAAGCTGAGATGGCCACGGTTAGGATGTGTTTGAAGGGCAAGGAGTTTTGA 1218 44.25 MGSCLSAGSKEVITGSSVSPVLGASKQKDSDNVFEQQNQGEATVHRIPGRMFLNGSSEVASLHTQQGKKGMNQDAMIVWENFGSRTDTFFCGVFDGHGPYGHLVAKRVRDSLPLKLTAHWEANEDISEELGCKAEAVNNEDSTLEISWKEASSPLTQPEISEKLKESFLKAFQIMDGELKIQPSIDCFCSGTTAVALVKQGRDLVIGNVGDSRAVLGTRDEDNSLQAVQLTIDLKPDIPGEAERILKCKGRVFAHQDEPEVARVWLPNNDSPGLAMARSFGDFCLKDFGLISVPEISYRFLSDKDEFIVLATDGIWDVLSNKEVVDIVASAPARCAARSLVESATEAWRCKLPSSNIDDCAVVCLFLDSNLNVMASETNIKYKEVKSAIQAEMATVRMCLKGKEF 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18342714 18350959 + CcPI632755_03g010570.1 Cco03g1057 174416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1057 405 ProSiteProfiles PPM-type phosphatase domain profile. 59 367 IPR001932 -
Cco03g1057 405 CDD PP2Cc 59 367 IPR001932 -
Cco03g1057 405 Pfam Protein phosphatase 2C 152 331 IPR001932 -
Cco03g1057 405 SUPERFAMILY PP2C-like 57 368 IPR036457 -
Cco03g1057 405 Gene3D - 55 373 IPR036457 -
Cco03g1057 405 SMART PP2C_4 48 365 IPR001932 -
Cco03g1057 405 PANTHER PROTEIN PHOSPHATASE 45 366 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco03g1057 405 MobiDBLite consensus disorder prediction 20 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1057 Cco-Chr3:18342714 Cco11g0971 Cco-Chr11:15423598 6.40E-143 dispersed
Cco03g1057 Cco-Chr3:18342714 Cco02g0124 Cco-Chr2:1344607 6.20E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1057 - - - 0.0