Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1064 ATGGATTCCGACAACGAACTCGAAGAACCCGGCCACCAAATCCAAAAACCCTCCGATTTCTTCAACAAAATAGTATTCCAGCAAGCCGATTTAATCTACAACGCCATCGCCTTTCTGATCGCTCCAGCCTCCACTCTCGTCTCCCTAATCTGGGAGGCATTTCACCGCGCAGAAGAGACAAAATGCACCGTCGAGTCCGCCGTAGCGCATCGGGTGAGAGTGGCGGTTAGAAGGCTGAGCTACGGGGTTGTGGCGGCGGCGTTGATGTGTATAGTGATGGTGTTGCTTCTGGTAGTAGCGGCGGCGGTGAGTGCGTTGGCGATTAGGTTTTGGGTAGAAGAGCCGGTGGGGTTGAAGGAGAAATTGAATTTTGATTATACTCAGGCTCGGCCTAGGGCTTTGTTTGGAATGGAAAATGGAAGCGTAATGAAGATGATGAAGAAGAAGAAGAATTTGGGGATTCCGGTAGGGCATACGTTCTTTGTGTCGGTGGTTCTTTTGATGCCTGAATCTCATTTCAATCGGGAGTTTGGCGTTTTTCAGTTGAGTGCAGAGTTGATATCAACAAATGGAAACATAATAGCCAGTTCAAGCCAACCCTGCATGCTCCGGTTCAGAAGCACACCGGTCCGGTTCGCCCGAACTTTCCTCACTAGTTTTCCTCTACTCTTGGGAATCTGGACCGAATCCCAAAAGCTAAGTTTCCCCATACTAAAGCACAAGGAAGAAAATCAGGAACGAAGCGCATTTATCCAAGTTACCATAAGCCCTCGCATTGGAACATCGGCCCTCCCGGAGCTATACGAAGCTCATATTCAAATAAACTCAAAACTACCCAAGACAAAAGAGTTGTTGGGTCGCTGGCGATGGACTTGCTTCCTATGGACATCTCTCTATTTGTATCTGATGTTTGTAGTGATGTTTATGTTCTTTTGGAAGCCAGTTGTGTTTGGGGGAATGAGCTTGGCGGAGTTGAGTGGGATGGATAAAGGAGGTCCAACGAGCAAGGAAGCGGAGGAGTCGGAGATAACGGTAGAGTTGTTGAGAAAATGGCAAGAGATGAGGAGGAAGAGAAAGGCTGCCATGTTTGGGTATGGAGAAGTAGATGTTGGGTCCACATCCGAGTCCAGCATTAGTTGTAGCAGAGACAGAGAGGAGTATGTAGCTGCTGTTTTCGAGGAAGATGTGGGGGACTCCGAGTCGGTGCTTCTACGAGTCAACGACTTTTCTAGTATCTATAGAATGAGCACTGTGAACGTTTTCGATTTTCTATTCACTCATGATCTGGCCTGGTCGACCCGGTTGACTGCTTCTATAGATAAGGCGGAGCGCGATTGA 1338 48.13 MDSDNELEEPGHQIQKPSDFFNKIVFQQADLIYNAIAFLIAPASTLVSLIWEAFHRAEETKCTVESAVAHRVRVAVRRLSYGVVAAALMCIVMVLLLVVAAAVSALAIRFWVEEPVGLKEKLNFDYTQARPRALFGMENGSVMKMMKKKKNLGIPVGHTFFVSVVLLMPESHFNREFGVFQLSAELISTNGNIIASSSQPCMLRFRSTPVRFARTFLTSFPLLLGIWTESQKLSFPILKHKEENQERSAFIQVTISPRIGTSALPELYEAHIQINSKLPKTKELLGRWRWTCFLWTSLYLYLMFVVMFMFFWKPVVFGGMSLAELSGMDKGGPTSKEAEESEITVELLRKWQEMRRKRKAAMFGYGEVDVGSTSESSISCSRDREEYVAAVFEEDVGDSESVLLRVNDFSSIYRMSTVNVFDFLFTHDLAWSTRLTASIDKAERD 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18614193 18616762 + CcPI632755_03g010640.1 Cco03g1064 174423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1064 445 Pfam Putative adipose-regulatory protein (Seipin) 94 300 IPR009617 GO:0019915(InterPro)
Cco03g1064 445 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 12 382 IPR009617 GO:0019915(PANTHER)|GO:0019915(InterPro)|GO:0030176(PANTHER)|GO:0034389(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1064 K19365 - - csv:101206366 528.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1064 Cco-Chr3:18614193 Cco04g2185 Cco-Chr4:35529799 2.30E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g851 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01019 Cam03g1071 Cec03g1072 Cco03g1064 Clacu03g1043 Cmu03g1633 Cre03g1333 Lsi06g00696 . . Cme02g00910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010534 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 2 1 1 2 2 1 1 1 1 31