Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1071 ATGGTGGAGGAGAATGGTGATGTACCTCTTGTTATGGAGGAGGTCAGTGGGGATGAAGCTAGCCAAGAGGAGAGCTTTGATATCACTGTCATTGCAGTTTCAGAGATAAGTGAGCTTGGAGACATCATTGAGGAAAGCATTGATATTATTGATATCCCAGGCTCCTGCCATGGTTTTTGCAAATATGGTACAAAACATGCTCTTGAAGGGAAGCCTGCAAGTCCAGTCTTGAGAAAAGTTGAACCAGTTGGAGGTGATGACCGGGATTTGAGGAGGATTATAGTTTCATTGGCAAAACAAAACAAAGATTCAACTAGTCCAAAGTCCTCCCAGATTAACACCATAAATACTACCGACTTGGAGGAAGATATAGTATCTTCCCTTGAGATTGTTACTCCCTCTCCAAAAAGGCTTTTACCTTCCCTCAAGGAAGTGCAGGCTGCGGCAGTGCTTTATAGTCGGACGAAACTTAATTTGTCTCTATCAAAGACATCTTTTGCCGGGGCAGTTCACGAACCCCAAGAAATAAAGAAATTCAAAAAGAATGAAATAGAGGAAATGGCTCAAAATAGTGTTCATACCACCGAGTCATCTCGACCAAAATCTTCATATGCAACATACAACAGCTTGAAGCATGAACAAGAGGCAGATAGGAACCCTATAGTGCCACCATTGTCAGTGAAAATGAACATTGTGCGGCTTTCTAGAAATGGAATTAGTTCTAAAATTTCATCGCATCTCCATCAGTATCCAAGGCCACCATGTGAACCCGTCCATGTGGAGCACTGTGGCTCTACCTTAGGAAATGATGTGAAAAAAAGTGAGAATTCGAAGGTGGAACACAGGCTTAAGACCCGTAGGATGATTCTAACTGATTCAAAAAATGGAGATAGCCAGTCTAGAAAGCTGAAGTTTAGGAAGGGGAGGATGGTTGACCTTCAAGCTAAAACCAGTACACCAAGGGGGCTTAAATTTGGGCATGTATGTTTACTTGGTGAGACTCAAAGTCCTAAAGGTGATTCAAGAAAGAGAAACATCAAGGGTAAAGAGGGAAACCAAAATGGTCATGAAGTAAAGGAAGCTGAGAATAGTTCTTTGAGAAAACAAGATCAAGAATTAAAGAAAAAGAGAAGCTTTAGGAGGAAGGAAACCATTGATGGTAAATTGGTTTCTAGTAGAATCAAATCTAAGAGAGTTGTCCTTCGACATCAGGATTCGAGAGGGAAGGAAGAAATCCCAAATTTGTTTAATAATGTCATTGAAGAGACGGCAAGCAAGCTTACACAGACCGGGAAGAGTAAGGTCAAGGCTATGGAAGCTGACATTGATCGCCAAGCCTTTGAATCAGATAAAACACTGATGGATTTTGAATTCCTACCTGATTTTCCAAAAGAGGCTTCTGTATTGAAGTATGAAATTGCTCCAACCGCTGATAATAGTTATTTTGATGGCAAGATTGCTAATGGCAACTGTGAGAATATGGAAAGTTGTCTTTCTTCTATAACTACTAATCAACCATGTATACCTGAAGAATCAACGAAAGGAGATGACATTGAGACGCAGCATCCTTTAGAAGATGAGCAGAAAGGGTCTTACATTCCTATGGGAATGTTAAGGACATCAGAAGATGGATACAACTGGAGGAAATATGGGCAGAAACAGGTCAAAGGTAGCGAATATCCAAGAAGCTACTATAAATGTACACATTCAAATTGTCAAGTAAAGAAAAAGGTGGAGCGATCTCTTGATGGTCAAATAACAGAAATCATCTATAAGGGTGCTCACAATCATGCAAGACCTGATCCCAATCGTCGAGCCATGCTTGGATCCATGCCAACACCAGGTGATACTCCAGAAATTGGTGAAGGTGGTGGAAACCGTTCCAAACTTGAAGCTGGGCTGGCATGGAGAAACACTCAATATGGGATGAAGGATATCAAACTTATCTCAGATTGTAGTGTTGTTGATGGTCTAGAGAGGACATCCTCCGTATCAGTTGTGACTGAGCTTGCTTATCCATCGTTAAATCCCCAAGGGAAAACAGTTGGTGTTCTTGAATCGGTGAGAACGCCAGAGCTTTCATCCATACTTGCTAGTCATGATGATGATGATGGTGGTGGTGGTGACGATGATGATCTTACAACTCAGGGAAGTATTTCAGTTTGCACAGAAGCTGATGATGCCGAACCTGAATTGAAAAGAAGGCGAAAAGAGGGCAGTTCAATTGAGACAAACTTGGCTTCAAGATCTGTACGTGAACCAAGAGTAGTTGTCCAAATTGAAACTGAAGTTGACATACTTGAAGATGGGTATCGGTGGCGGAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGCACTAGTGCAGGCTGTTTAGTAAGGAAACATGTTGAGAGAGCATCACATGATCTGAAATGTGTTATTACAACATACGAAGGGAAACACAATCATGAAGTGCCTGCAGCAAGAAATAGCGGTCAAGTAAACTCGAGTAATGGCAATGCCCAACCGTCTGCTTCTCATGTGCAACCGAACATGGGTTTGTCCAGAAACTCGAACGTCCCAAAGTCTGAAACACAAATTCAAGATCTTGCTGCCCAGTTCTATCCAAAACCGGAATTTAACCATGACTATCAGAGGTCTGGTTGTTTTGACACTTTTACAAATGATATCAAACTTGGAGCTCCTTCATTCTGTCAAATGAAGTTCCCTCCACTCCGAAACACCTTGCCTTATAGTTCCTTTGGATTAAATTCAAAGCATACTGGAACAAGTATGTCTGGTTCTTTGGCATCCGTGGTCCCAGACTTTCCAATTTCCTTGCCATTGAACCAGAACCTTTCAGCTGCTGGTTATGATTTTACCAATGGAAGACCAATACCACCATTTCAGGTTTTCCTGCCTGGTCAGCAGCTGAGGGACACAGATAGATTCCTCACACCCAAACAGGAGCATGACGACGATAACATCTGTGCTTCGTTCCAACCAGTTGTTGATAGTTCGAGTGGATCTTCATCGTCATCAGTCTCATCGGTTCTGATGACCATTACAGAACAGACAATTCATTTGATGAAGAATGGCCATGGGAAATCATGTCACTTATCAGATGGCTATTTTGCTCAACGCTGCCTACCACATAAGGTGAGCAAATAA 3174 41.84 MVEENGDVPLVMEEVSGDEASQEESFDITVIAVSEISELGDIIEESIDIIDIPGSCHGFCKYGTKHALEGKPASPVLRKVEPVGGDDRDLRRIIVSLAKQNKDSTSPKSSQINTINTTDLEEDIVSSLEIVTPSPKRLLPSLKEVQAAAVLYSRTKLNLSLSKTSFAGAVHEPQEIKKFKKNEIEEMAQNSVHTTESSRPKSSYATYNSLKHEQEADRNPIVPPLSVKMNIVRLSRNGISSKISSHLHQYPRPPCEPVHVEHCGSTLGNDVKKSENSKVEHRLKTRRMILTDSKNGDSQSRKLKFRKGRMVDLQAKTSTPRGLKFGHVCLLGETQSPKGDSRKRNIKGKEGNQNGHEVKEAENSSLRKQDQELKKKRSFRRKETIDGKLVSSRIKSKRVVLRHQDSRGKEEIPNLFNNVIEETASKLTQTGKSKVKAMEADIDRQAFESDKTLMDFEFLPDFPKEASVLKYEIAPTADNSYFDGKIANGNCENMESCLSSITTNQPCIPEESTKGDDIETQHPLEDEQKGSYIPMGMLRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSLDGQITEIIYKGAHNHARPDPNRRAMLGSMPTPGDTPEIGEGGGNRSKLEAGLAWRNTQYGMKDIKLISDCSVVDGLERTSSVSVVTELAYPSLNPQGKTVGVLESVRTPELSSILASHDDDDGGGGDDDDLTTQGSISVCTEADDAEPELKRRRKEGSSIETNLASRSVREPRVVVQIETEVDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKCVITTYEGKHNHEVPAARNSGQVNSSNGNAQPSASHVQPNMGLSRNSNVPKSETQIQDLAAQFYPKPEFNHDYQRSGCFDTFTNDIKLGAPSFCQMKFPPLRNTLPYSSFGLNSKHTGTSMSGSLASVVPDFPISLPLNQNLSAAGYDFTNGRPIPPFQVFLPGQQLRDTDRFLTPKQEHDDDNICASFQPVVDSSSGSSSSSVSSVLMTITEQTIHLMKNGHGKSCHLSDGYFAQRCLPHKVSK 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18674904 18680855 + CcPI632755_03g010710.1 Cco03g1071 174430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1071 1057 Gene3D WRKY domain 536 601 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 384 852 IPR044810 GO:0003700(InterPro)
Cco03g1071 1057 Coils Coil 356 376 - -
Cco03g1071 1057 MobiDBLite consensus disorder prediction 829 864 - -
Cco03g1071 1057 ProSiteProfiles WRKY domain profile. 762 827 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 MobiDBLite consensus disorder prediction 328 379 - -
Cco03g1071 1057 FunFam WRKY transcription factor 57 753 827 - -
Cco03g1071 1057 FunFam WRKY transcription factor 529 601 - -
Cco03g1071 1057 ProSiteProfiles WRKY domain profile. 536 600 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 SMART CaM_binding_2 299 455 IPR012417 GO:0005516(InterPro)
Cco03g1071 1057 MobiDBLite consensus disorder prediction 697 716 - -
Cco03g1071 1057 MobiDBLite consensus disorder prediction 827 864 - -
Cco03g1071 1057 SMART WRKY_cls 541 599 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 SMART WRKY_cls 767 826 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 Gene3D WRKY domain 754 820 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 MobiDBLite consensus disorder prediction 337 379 - -
Cco03g1071 1057 SUPERFAMILY WRKY DNA-binding domain 760 827 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 SUPERFAMILY WRKY DNA-binding domain 539 600 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 Pfam WRKY DNA -binding domain 768 825 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 Pfam WRKY DNA -binding domain 542 597 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g1071 1057 Pfam Plant calmodulin-binding domain 364 438 IPR012417 GO:0005516(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1071 K18835 - - csv:101206605 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1789 Cco-Chr1:30596034 Cco03g1071 Cco-Chr3:18674904 3.10E-126 dispersed
Cco03g1071 Cco-Chr3:18674904 Cco10g0387 Cco-Chr10:4528770 5.10E-83 dispersed
Cco11g0476 Cco-Chr11:5076830 Cco03g1071 Cco-Chr3:18674904 8.60E-11 dispersed
Cco03g1071 Cco-Chr3:18674904 Cco05g2663 Cco-Chr5:34686077 1.60E-65 transposed
Cco03g1071 Cco-Chr3:18674904 Cco10g0443 Cco-Chr10:5212577 1.60E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0939 . Cone10ag0603 Cone3ag0629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01024 Cam03g1073 Cec03g1078 Cco03g1071 Clacu03g1044 Cmu03g1634 Cre03g1334 Lsi06g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005091 1 5 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 1 1 1 0 1 1 1 1 1 2 3 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58951 PF07839 CaM_binding 1.50E-13 No_clan Cco TF