Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1073 ATGAAGCTCCAAGTCGCCGACGACGATCTCGACGCCCTTCTTCTTCCTCCTCCTAACTTCTCCATGGTTGAGGACGGCATTTTCCGATCCGGCTTCCCTCAGCCCCTCAATTTCCCCTTCCTCCGCACCCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAAAGCTAATAATATCAAGCTTTTTCAATTCAAAATTGAAGGCAAAAAGGAGCCTTTCGTTTCGATTCCGGAGGATGCTATTCTTGAGGCTCTAAAAATCCTTATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGCGGAAAGCATCGAACAGGCTCGCTCGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGAGTTCGGTGTTTGAGGAGTACCAGCGATTTGCAGGCATGAAATCGAGGGTGACGGATCTACAATTCATCGAGAAATTCGACATTGGGTCTCTGAGGCAATGTGTTTACAGCATCATATATCAGTACCAAGGTTATAGCTCAAACAAGAGGAGGCTGTTGTATAGAGAAAACTTGCAAAAGCCTCAAACAACATCAGTTTAG 600 45.83 MKLQVADDDLDALLLPPPNFSMVEDGIFRSGFPQPLNFPFLRTLNLRSIIYLCPEPYPEENLEFLKANNIKLFQFKIEGKKEPFVSIPEDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLSSVFEEYQRFAGMKSRVTDLQFIEKFDIGSLRQCVYSIIYQYQGYSSNKRRLLYRENLQKPQTTSV 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18766671 18768379 - CcPI632755_03g010730.1 Cco03g1073 174432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1073 199 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Cco03g1073 199 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Cco03g1073 199 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Cco03g1073 199 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Cco03g1073 199 CDD PFA-DSP_Siw14 19 160 - -
Cco03g1073 199 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311(InterPro)
Cco03g1073 199 Pfam Tyrosine phosphatase family 14 162 IPR004861 -
Cco03g1073 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 189 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cco03g1073 199 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470(InterPro)
Cco03g1073 199 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Cco03g1073 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 159 IPR029021 -
Cco03g1073 199 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1073 Cco-Chr3:18766671 Cco09g1122 Cco-Chr9:10805440 6.50E-56 dispersed
Cco03g1073 Cco-Chr3:18766671 Cco02g1936 Cco-Chr2:32245867 2.50E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1073 K18045 - csv:101211082 360.918