Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1078 ATGAAGTTCTCCGGTTGTTTGCCCTTGCTTGCAGAGCAAAAAAGTAGGAATTCATGTCTTTGTAGCCTCCTTCCAACTGCTTCTTTGCTTTGTCTTGTATTGTTTGTGGGGAGTGTATACGTAGCACCAGATTATAGGGAGAAAATATCTAGATGGGGAATAGATGGTTTGGTTGGTTCAAAGTTCAATAAATGTGAGAATCAATGTAGGCCAAATGGAAGTGAGCCACTACCTAAAGACATTGCTGTCACTGCATCTAACTTGGAAATGCGACCGCTGTGGGGTGCATCAAAGCATTCTTATCAGAATCCCGTTAACTCATCAAGTAACTTATTTGCCATGGCCGTTGGGATTAAACAAAAAGATCTTGTAAATAAAATGGTAACCAAGTTTCTTTCTAGCGACTTTGCTGTCATGCTTTTCCATTATGATGGTATTGTGGACGAGTGGAAGGAGTTTGATTGGACTAATCGTGTGGTACATGTAACTGCAGTCAATCAAACTAAGTGGTGGTTTGCCAAGCGCTTCTTACATCCTGATATTGTTGCAGAATATAATTACATCTTTCTTTGGGATGAGGACCTTGGAGTTGACAATTTCAATCCAAAACAGTATATACATATTATTGAAAGTGAAGGGCTAGAGATATCACAACCAGCACTTGATCCATACAAATCAGAGGTGCACCATCAAATTACTGCACGTGGGAGGCGATCAATAGTGCACAGGAGAACTTTTAAACCTAGTAATGGTGGAAAAGGTTGTGATGTCAACAGTACAGCCCCTCCATGCACTGGATGGATAGAAATGATGGCCCCGGTTTTTTCCCGAGCTGCATGGCGTTGTGTTTGGTATATGATCCAGGGTGATCGAACGAAGAATGTTGGTGTAGTTGACTCTGAGTATGTAATCCATTATGGAAGACCTACACTTGGTGGTCCAGAAGAAAATGAGACATCTTCCAAGTCTCATGTAAAGGATCACAGAGCTGATGTAAGAAGGCAGTCCTATATTGAACTAGATGTATTTAGAAAAAGATGGCAAAAGGCCGCTGAGCAAGATGAGTGCTGGCGAGATCCATACCCAGAGACAGTGGAGGAAACTTACATGCCCATCTGTATTCAAGGACGAGGGCGAAAGAATGATTGCATATCAGCAAGCCAATATCTTTACATGAAATCTCAGCATGCATATACTTGTGTGGGTGAGGATGGAAGGTAA 1221 41.77 MKFSGCLPLLAEQKSRNSCLCSLLPTASLLCLVLFVGSVYVAPDYREKISRWGIDGLVGSKFNKCENQCRPNGSEPLPKDIAVTASNLEMRPLWGASKHSYQNPVNSSSNLFAMAVGIKQKDLVNKMVTKFLSSDFAVMLFHYDGIVDEWKEFDWTNRVVHVTAVNQTKWWFAKRFLHPDIVAEYNYIFLWDEDLGVDNFNPKQYIHIIESEGLEISQPALDPYKSEVHHQITARGRRSIVHRRTFKPSNGGKGCDVNSTAPPCTGWIEMMAPVFSRAAWRCVWYMIQGDRTKNVGVVDSEYVIHYGRPTLGGPEENETSSKSHVKDHRADVRRQSYIELDVFRKRWQKAAEQDECWRDPYPETVEETYMPICIQGRGRKNDCISASQYLYMKSQHAYTCVGEDGR 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19012097 19017234 - CcPI632755_03g010780.1 Cco03g1078 174437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1078 406 Pfam Protein of unknown function (DUF707) 68 352 IPR007877 -
Cco03g1078 406 PANTHER OS06G0731900 PROTEIN 20 361 IPR007877 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1078 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1078 Cco-Chr3:19012097 Cco11g0054 Cco-Chr11:580177 2.50E-107 dispersed
Cco03g1078 Cco-Chr3:19012097 Cco08g1941 Cco-Chr8:30285382 1.50E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0606 Cone3ag0632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01039 Cam03g1084 Cec03g1089 Cco03g1078 Clacu03g1058 Cmu03g1645 Cre03g1345 Lsi06g00708 . . Cme02g00925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000870 4 6 3 4 4 2 3 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 9 2 88