Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1084 ATGGACCAGAGATGGGTTTTGGGAAAATTGATTCCCTTTTCCTGTATGAGGGTTTTTTGGGTTCGTTCTTCAGTGTCAGGCCACAAACCGGTTTCTTCTTTCTCTCCTTGTAAGTTTCTTGATTGGCATGCTTTGTTGCTCTTGTTCTTGTTGATTTTTTGCTTAAACCCTTCCCAATCAGTGGACCTTGACCCTGAAGATGAGGCCTCTCTTTTGGCGTTCAAATCATCGATTCTAGACCCTAATAAGAATTTGTCAAGCTGGGTAGGTTCTAATTGTTCAGATTGGACTGGAGTTGCTTGTGAAAACAAGACTGGGAGAGTGGTTGCCATTAAACTGACTGATATGAACTTGTCTGGTCAAATTAACTCTAGATTCTGTAACCTCTCGTTTCTCGAGCAGCTGGTTCTGTCCCATAACAACTTTTCTTGCTCGATACCAACGTGTTTAGGCAATTTGATCCGCCTTCGGATTGTTGATTTGAGTCGTAATCGGTTTCAAGGAGTTGTGCCTGAGACATTGATGAAGCTAGAGAACTTGGAGGAGCTTGTCTTGGTTGGGAACCAAGACTTGGGGGGTCCTGTTCCTTCTTGGATTGGGAACTTCTCTACAAAGCTGCAGAAACTTGATCTGGGTTTCAACTCTTTTAGTGGTGAACTGCCTGAGAGTTTGTTGAACTCGACGTCTCTGAAGTATTTGGATCTTCAAAATAACTATTTGAAGGGAAATGTGTATGATTTCCGTCAGCCTTTGGTTTCGCTCAATCTCATGTCGAATCGGTTTTCTGGAACTCTACCTTGTTTTTCAGCTTGCGCACAATCCCTCACGGTTCTGAATTTAGCTAACAATTCTATTTTTGGAGGAGTGCCCACATGTATTGCGTCACTTCGTGCTTTGGTTCAGTTGAATCTATCATCCAATCATTTAACGTACAAGATGTCTCCTAGACTCCTGTTTTCGGAGCAGCTACTTGTGTTGGACTTGAGTAACAATGATCTATATGGTCCTCTTCCGAGCAAGATTGTGGAGACAATAGAGAAATCAGGGCTTGTTCTGCTTGACTTGTCTCATAATCGATTTTCAGGTGGAATTCCATCAAAGATCACAGAACTGAGAAGTTTGCAGGCATTGTTCCTTTCACACAATCTCCTTGTGGGGGAAATTCCTGCAAGGATTGGGAATCTGACTTATCTCCAAGTCATTGATCTCTCATATAACTACTTATCGGGCTCAATTCCGTTGAACATCGTCGGATGCTTTCAACTACTTGCTTTGATACTTAACAACAATAATCTTTCTGGTGAGATTCAACCTGAGCTGGATGCATTGGATAGTCTGAAGATATTAGACATTAGCAACAACATGATTTCTGGTGAAGTCCCACTGACTCTGGCAGGATGTAAATCATTGGAGATCGTTGATTTTAGCTCAAACAATCTCTCAGGAAACTTAAACGATGCAATAACAAAATGGTCGAACCTGAGATATCTCTCTCTCGCTCGCAATAAATTCATAGGTAACCTTCCCAGTTGGTTGTTTGCATTTGAAGTAATTCAGCTGATGGACTTCTCAAGCAACAAGTTCTCCGGCTCCATACCTGACGTCAACTTCAACATTAGCTCGAATTTTAACAGTGGTGACATTAGTAGACCATCAAAAGAACCATTCGCAGTAAAGAAAATTGTGAATTTTAAAGTTTCCACAGTTGTAGATGTTGGCAGTGAATTACAATTCAACTATGATCTATCTTCAGCTGTTGGGATCGATTTGTCGAATAATTTACTACACGGGTCGATCCCAGAAGGTCTATTTTCACTAGAGGGTCTGCAATACTTGAACTTATCATATAACTCTCTTGAAGGTCAGGTTCCTGGGCTAGGGAAAATGCAGAGTGTAAGAGCCTTAGATTTGTCCCACAATTATCTGTCTGGTGAGATTCCAGGAAATATATCCATCCTTGAGGACTTAACTCTTCTCGATCTGTCGTATAATTGCTTCTCGGGATTGGTTTCGGAGAAGCAGGGATTTGGGCGGTTTCCAGGTGCATTTGCTGGGAATCCAGACCTGTGTGTGGAGTCTTCGGGCGAAGGGTGTCACTCCAGTGGTATTCCAACTGTCCCAGGAAAGATATCAGATGGCGAAATGGAGGGGCCGATATCGGTTTGGGTTTTCTGTTTGAGTGCATTCGTAAGTTTCTACTTTGGTACTGTTTCCCTCTTGTGTTCTGCCAGAGCAAGAAACTATTTTCTCCACACAAAAGCTTGA 2265 42.21 MDQRWVLGKLIPFSCMRVFWVRSSVSGHKPVSSFSPCKFLDWHALLLLFLLIFCLNPSQSVDLDPEDEASLLAFKSSILDPNKNLSSWVGSNCSDWTGVACENKTGRVVAIKLTDMNLSGQINSRFCNLSFLEQLVLSHNNFSCSIPTCLGNLIRLRIVDLSRNRFQGVVPETLMKLENLEELVLVGNQDLGGPVPSWIGNFSTKLQKLDLGFNSFSGELPESLLNSTSLKYLDLQNNYLKGNVYDFRQPLVSLNLMSNRFSGTLPCFSACAQSLTVLNLANNSIFGGVPTCIASLRALVQLNLSSNHLTYKMSPRLLFSEQLLVLDLSNNDLYGPLPSKIVETIEKSGLVLLDLSHNRFSGGIPSKITELRSLQALFLSHNLLVGEIPARIGNLTYLQVIDLSYNYLSGSIPLNIVGCFQLLALILNNNNLSGEIQPELDALDSLKILDISNNMISGEVPLTLAGCKSLEIVDFSSNNLSGNLNDAITKWSNLRYLSLARNKFIGNLPSWLFAFEVIQLMDFSSNKFSGSIPDVNFNISSNFNSGDISRPSKEPFAVKKIVNFKVSTVVDVGSELQFNYDLSSAVGIDLSNNLLHGSIPEGLFSLEGLQYLNLSYNSLEGQVPGLGKMQSVRALDLSHNYLSGEIPGNISILEDLTLLDLSYNCFSGLVSEKQGFGRFPGAFAGNPDLCVESSGEGCHSSGIPTVPGKISDGEMEGPISVWVFCLSAFVSFYFGTVSLLCSARARNYFLHTKA 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19185790 19188054 + CcPI632755_03g010840.1 Cco03g1084 174443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1084 754 Pfam Leucine rich repeat N-terminal domain 65 101 IPR013210 -
Cco03g1084 754 Pfam Leucine rich repeat 251 309 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine rich repeat 132 189 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Gene3D Ribonuclease Inhibitor 178 249 IPR032675 -
Cco03g1084 754 Gene3D Ribonuclease Inhibitor 66 177 IPR032675 -
Cco03g1084 754 SMART LRR_typ_2 606 629 IPR003591 -
Cco03g1084 754 SMART LRR_typ_2 296 321 IPR003591 -
Cco03g1084 754 SMART LRR_typ_2 153 176 IPR003591 -
Cco03g1084 754 SMART LRR_typ_2 443 466 IPR003591 -
Cco03g1084 754 SMART LRR_typ_2 129 152 IPR003591 -
Cco03g1084 754 SMART LRR_typ_2 204 227 IPR003591 -
Cco03g1084 754 SMART LRR_typ_2 371 395 IPR003591 -
Cco03g1084 754 SMART LRR_typ_2 653 685 IPR003591 -
Cco03g1084 754 Gene3D Ribonuclease Inhibitor 250 701 IPR032675 -
Cco03g1084 754 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 345 568 - -
Cco03g1084 754 SUPERFAMILY RNI-like 320 667 - -
Cco03g1084 754 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 421 725 IPR051716 -
Cco03g1084 754 FunFam LRR receptor-like serine/threonine-protein kinase EFR 64 344 - -
Cco03g1084 754 Pfam Leucine Rich Repeat 609 625 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine Rich Repeat 493 513 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine Rich Repeat 398 417 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine Rich Repeat 632 651 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine Rich Repeat 373 395 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine Rich Repeat 205 226 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine Rich Repeat 445 467 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 Pfam Leucine Rich Repeat 350 369 IPR001611 GO:0005515(InterPro)
Cco03g1084 754 FunFam Leucine-rich repeat receptor protein kinase EMS1 578 673 - -
Cco03g1084 754 SUPERFAMILY L domain-like 65 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1084 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1084 Cco-Chr3:19185790 Cco03g1462 Cco-Chr3:29228324 1.20E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0928 Cone1ag1682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01042 Cam03g1087 Cec03g1095 Cco03g1084 Clacu03g1065 Cmu03g1648 Cre03g1350 . . . Cme02g00927
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012382 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28