Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1118 ATGGAAAGCTCCTTTCCATCATATATTTCTCTTTCTTTCATCCTCTCAACCCTTTTCCTATTTCCTCACCAATCCTTCAGCCAACACCCATATCTTATTAGAAATAAGACAGAAGGTTGCTCAATTAATGACACTTCTCCCCCAAAAGGATATAATTGTACTGATTCCACCGATTCATGTGTCTCCTATTTGTTTTTAAGATCATCCAATTCTCAAAATTCTGGCTTACATTTCAACGAAATATCATTAGGAAAAACCAATCTGTGGACGAACCCAGTTGATTGTAAATGCATGGGTCCTTTCTATCAATCTACCATCCAATACAATATCAACAATGGTGATAGCTATGAAAAGATAGCGAACGATGTTTTTCATGGCTTCACCAGCTGCTCGGTGCTAAGAAGTTTGAACCTTAATTTTGCTGTTGATGCAACTTCTTCTATAGGAAAAACATTACAAATATCATTGCAATGTGCTTGTCCAAGCATGGGTGAAAAAGCCAATGGGATTGCAACGTTGGTTGTGTATATGCCACAATCAAATGAGAGCATTGGATCAATTGCTACTGTTTTTGGGGTTGAGGAAGAAGGCATTTTAGAAGCCAACATGTTTTCTAGTTCAAACAACACATTTGCGTTTACGCCTCTCTTGATTCCGTTGAGCCAAAGAAAGAGTTGCACAATATTACCAAACTCTTCCTTGATGTGTATTCGTTGGATTGAGAGGCGGAAACTTATTAACAAACTCATCTGGGCTGCAATAGGTTGTGGAATAACATTGGTATGTGGTTTCTTTTTCGGATGCATTGGACATCAACGACTAATTAGGAAAAGAAGACGTAAACTTTATAAGAAAAAGTTTTTCAAGCAAAATGGTGGCATGTTATTGCAGCAAAAGCTAGTTGAAGACAATGAGAGAGTAAAAATATTCACACAAGAAGAACTTGAAGAAGCAACCAACAACTATAGTGAAAGTAGTATTCTTGGTGAAGGAGGGTATGGTACAGTTTATAAAGGAATACTCCATGATAACACCGTTGTTACAATCAAAAGGTCAAAGCAAATCGAATCAAATTGGATCGAACAATTCATCAATGAAGTTATTGTTCTCTCTCAAATCAACCACAAAAATATTGTCAAGCTTCTAGGTTGTTGTTTGGAGACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCGAATGGGACGCTTTCATATCATATTCACAACAAATTAGATCATGGAGAATCACCTTCCCTTTCATGGGAAACTCGTCTGAAAATTGCTTCTGAAGTTGCTGGTGCTATATCTTACATGCATTCTATAGTTTCAACTCCCATTTTTCATAGAGATATAAAGTCCTTGAACATTCTTTTGGATGATAAGAATAGTGCAAAGGTTTCTGATTTTGGAATATCAAGATTTGTGTCATGTGATCAATCTCACCTGACTACAAAAGTGTTGGGAACAATTCGGTATATAGATCCTGAGTACTTCAAATCAAGTCAATACACTGAAAAGAGCGATGTTTATAGCTTTGGAGTGTTGATGGTAGAACTTTTAACTCGAAAGCTACCAACTTTTGCCAGAAATGATGGTGGAAACCTATTAGACTACTTCATTTCATTGGAAAGGACTAATGGACTTGTTGAAATTCTAGATGCTACATTGGTGAAGGAAGAGAGGATGGAGGTTGTTAACAATGTGGCAACACTAGCCATAAAATGTTTAAGATCAAATGGGAAAGAAAGGCCTACAATGACGCAAGTATATTTGGAACTAGAAGGATTGAGAAAGTCTCAAAATTGTATAGAAATTATTGAAGAAACTCATTCAACTACTTTTTCATTGAACTCATTTGAGATCAGTGATGACGAGCTTACTAATCCTTCATTCTTTGAGATTTTGATTCTTCCTACTAATGTCCACCCAGAAACACCTGAGAATCTAACCAAACATTCAACAACTTCTGCTCAACCAGTTGTTGATCAAACTCAGGCATATCTCAATCTTTAG 2013 36.36 MESSFPSYISLSFILSTLFLFPHQSFSQHPYLIRNKTEGCSINDTSPPKGYNCTDSTDSCVSYLFLRSSNSQNSGLHFNEISLGKTNLWTNPVDCKCMGPFYQSTIQYNINNGDSYEKIANDVFHGFTSCSVLRSLNLNFAVDATSSIGKTLQISLQCACPSMGEKANGIATLVVYMPQSNESIGSIATVFGVEEEGILEANMFSSSNNTFAFTPLLIPLSQRKSCTILPNSSLMCIRWIERRKLINKLIWAAIGCGITLVCGFFFGCIGHQRLIRKRRRKLYKKKFFKQNGGMLLQQKLVEDNERVKIFTQEELEEATNNYSESSILGEGGYGTVYKGILHDNTVVTIKRSKQIESNWIEQFINEVIVLSQINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSYHIHNKLDHGESPSLSWETRLKIASEVAGAISYMHSIVSTPIFHRDIKSLNILLDDKNSAKVSDFGISRFVSCDQSHLTTKVLGTIRYIDPEYFKSSQYTEKSDVYSFGVLMVELLTRKLPTFARNDGGNLLDYFISLERTNGLVEILDATLVKEERMEVVNNVATLAIKCLRSNGKERPTMTQVYLELEGLRKSQNCIEIIEETHSTTFSLNSFEISDDELTNPSFFEILILPTNVHPETPENLTKHSTTSAQPVVDQTQAYLNL 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20917580 20923644 - CcPI632755_03g011180.1 Cco03g1118 174477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1118 670 SMART serkin_6 322 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1118 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1118 670 SUPERFAMILY Protein kinase-like (PK-like) 306 593 IPR011009 -
Cco03g1118 670 Coils Coil 301 321 - -
Cco03g1118 670 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 117 603 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco03g1118 670 CDD STKc_IRAK 328 596 - -
Cco03g1118 670 Gene3D Transferase(Phosphotransferase) domain 1 398 617 - -
Cco03g1118 670 FunFam Wall-associated receptor kinase 2 398 615 - -
Cco03g1118 670 Pfam Protein kinase domain 322 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1118 670 FunFam Wall-associated receptor kinase 2 295 397 - -
Cco03g1118 670 ProSiteProfiles Protein kinase domain profile. 322 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1118 670 Gene3D Phosphorylase Kinase; domain 1 295 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1118 Cco-Chr3:20917580 Cco11g1970 Cco-Chr11:32175938 1.20E-90 dispersed
Cco03g1118 Cco-Chr3:20917580 Cco03g1119 Cco-Chr3:20944468 5.70E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86679 PF00069 Pkinase 6.20E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1118 - - - 0.0