Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1119 ATGAAAGCCTCTATTAATGCATCATATATTTCTCTTTCTTTCATCCTCTCAACCCTTTTCCTATTTCCTCACCAATCCTTCAGCCAACACCCATATCTTAATGGAAACAAGACAGAAGGTTGCTCTATCAATGATAACACTTCTCCGGCAAAGGAATACACTTGTACTGATCCCACCGACTCATGTTCTTCCTATTTGATTGTAAGATCCAATTCTCATAAAAATGAATTGGGTTTCAACAATATATCATTAGGAAACAGCAGTTTCTTGAGGATGGTAGTTTTTTGTAATTGTGAAGGTCCTTTCTATCAGTATACCACCGAATACAACGTTAAAAGTGGTGATAGTTATGAAAAAATAGCGAATGATATTTTTCATGGCTTCACCAGTTGCTGGATGTTGAGAAGTAAGAACCTTAACTTTGATATTAGTAGCAATGTTTCGATAGGCAGAAGAATTGTAGTTCCGCTACTATGTGCGTGTCCTTCAGAAGCTCAGAAATCTAATGGGATCGAGTCTTTGGCTGTGTATATGGTACAATCTAATGACAGCATTGGATCCATTGCAAAGGATATTGGGGTTGAGAAAGAAACCATTTTTAAAGCCAATATGCTTTCTAATTCAAGTCTTGTCTTCCCCTTTACGCCTCTTTTGGTTCCGTTGCCGCCAAGTTTCAGGCACAACAATAACAATAACCAGACAGTTTTTCTTTCTAGAGAAGGAGAAACTTCATTTATTCCTATTATCATCATCTTAAGTTCAATAGGTGCAGTATTAGCATTACTTTGTTGTGTCTGTTGCGGATGCTTAGGACATCGACTACTAAATAAGAAAAGAAGCCGAAGACTTTATCAGAAAAAGTTGTTCAAGCAAAATGGTGGCCTTTTATTGCAACAAAAGCTTCTTGAAGATAATGAGAGAGTCAAAATATTTACACAAGAAGAACTTGAACAAGCAACTGATAACTACAATGAAACTAGATTTCTTGGTCAAGGAGGATATGGTACTGTTTACAAAGGGATACTCCAAGACAACACTACTGTTGCAATCAAAAGGTCAAAGCAAATTCAAGCAAATTTTATTGGACAATTCATTAATGAAGTCATTATTCTTTCTAGAATCAACCACAAAAATATTGTCAAGCTTCTTGGTTGTTGTTTAGAAACTGAGTTTCCTTTGTTAGTCTATGAATTTGTTCCGAATGGGACACTTTCACACCATATTCACAAGAAAGATCATGAAGAATCAGCTACTATTTCATGGAAAACTCGTCTTAGAATTGCTTCCGAAGTTGCTGGAGCTATCTCTTACATCCACTCTACAGCTTCAACTCCAATTTTTCATAGGGATATCAAGTCTTTGAACGTTCTCTTGGATGATAATCTTAGTGCAAAACTTTCTGATTTTGGGACTTCAAGATTTTTCTCATATGATCAAACTCATTTGACTACCGAAGTGCAGGGAACTTTTGGATATATTGATCCTGAGTACTTTAGATCAAGTCAATACACGGAAAAGAGTGACGTTTATAGCTTTGGAGTGTTGATGGTAGAGCTTTTAACTGGGAAGAAGCCTGTGACATTTGGAAAAGATGAGGGGGAAAATCTAGTAGACTACTTCATTTCATTGGAAAAAGCTAATGAACTTGTTGATATTCTAGATGCTGAAGTAGCCAAAGAAGAAAATATGGAGGTTGTTAAATTTGTGGCAAAACTCACCTCTAAATGTTTAAGAACACATGGAAAAGAGAGACCTACCATGAAAGAAGTATATCTGGAGCTTGAAGGATTGAAGCAATCCCAAGATTGCTTACCTATTTTTGAAGAAAATCAATCAATCACAACTTATTCGTCCCACTACTCTTCAGAGACTGCTAGATTTGATTTTTAG 1890 36.14 MKASINASYISLSFILSTLFLFPHQSFSQHPYLNGNKTEGCSINDNTSPAKEYTCTDPTDSCSSYLIVRSNSHKNELGFNNISLGNSSFLRMVVFCNCEGPFYQYTTEYNVKSGDSYEKIANDIFHGFTSCWMLRSKNLNFDISSNVSIGRRIVVPLLCACPSEAQKSNGIESLAVYMVQSNDSIGSIAKDIGVEKETIFKANMLSNSSLVFPFTPLLVPLPPSFRHNNNNNQTVFLSREGETSFIPIIIILSSIGAVLALLCCVCCGCLGHRLLNKKRSRRLYQKKLFKQNGGLLLQQKLLEDNERVKIFTQEELEQATDNYNETRFLGQGGYGTVYKGILQDNTTVAIKRSKQIQANFIGQFINEVIILSRINHKNIVKLLGCCLETEFPLLVYEFVPNGTLSHHIHKKDHEESATISWKTRLRIASEVAGAISYIHSTASTPIFHRDIKSLNVLLDDNLSAKLSDFGTSRFFSYDQTHLTTEVQGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKKPVTFGKDEGENLVDYFISLEKANELVDILDAEVAKEENMEVVKFVAKLTSKCLRTHGKERPTMKEVYLELEGLKQSQDCLPIFEENQSITTYSSHYSSETARFDF 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20944468 20948232 - CcPI632755_03g011190.1 Cco03g1119 174478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1119 629 ProSiteProfiles LysM domain profile. 175 219 IPR018392 -
Cco03g1119 629 Gene3D Transferase(Phosphotransferase) domain 1 399 617 - -
Cco03g1119 629 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Cco03g1119 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1119 629 CDD LysM 176 219 IPR018392 -
Cco03g1119 629 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 93 599 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco03g1119 629 Pfam LysM domain 177 220 IPR018392 -
Cco03g1119 629 Pfam LysM domain 109 156 IPR018392 -
Cco03g1119 629 SUPERFAMILY Protein kinase-like (PK-like) 309 618 IPR011009 -
Cco03g1119 629 SMART serkin_6 323 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1119 629 Coils Coil 543 563 - -
Cco03g1119 629 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524(InterPro)
Cco03g1119 629 SUPERFAMILY LysM domain 176 220 IPR036779 -
Cco03g1119 629 ProSiteProfiles Protein kinase domain profile. 323 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1119 629 SMART LysM_2 176 220 IPR018392 -
Cco03g1119 629 SMART LysM_2 108 156 IPR018392 -
Cco03g1119 629 FunFam Wall-associated receptor kinase 2 296 398 - -
Cco03g1119 629 CDD STKc_IRAK 329 597 - -
Cco03g1119 629 ProSiteProfiles LysM domain profile. 107 155 IPR018392 -
Cco03g1119 629 Pfam Protein kinase domain 323 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1119 629 Coils Coil 302 322 - -
Cco03g1119 629 Gene3D LysM domain 160 234 IPR036779 -
Cco03g1119 629 FunFam Wall-associated receptor kinase 2 399 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1119 Cco-Chr3:20944468 Cco08g0757 Cco-Chr8:19364831 5.20E-99 dispersed
Cco03g1118 Cco-Chr3:20917580 Cco03g1119 Cco-Chr3:20944468 5.70E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86680 PF00069 Pkinase 7.80E-52 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1119 - - - 0.0