Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1133 ATGAGAGCAATGAACCCTTCTCTTCCATTTCCTAACCAAACTTTCCTTAACCCTAACCCTAATATCCCTGATTCTTCACATTCCCAACCTCAAAATCCTCCCCTCGACTTGCCTTCTTCCCTTTCCTCCCTCGAAAACCTCATCCATGTCGCCAACCAAACCCTTCAGTCTCTCTCCTACCTCACACTCACCCCAAACCCCTCTCATTACGCCAAAAATTCCGATCTTGTTCAGTGCCAATTTGATCGGCGCCACCGTGTCCCCCCGCATTCTCTCTTCCGCCACTCCCTCCTCTGCCCTTCCGCTTCCCTGCCTCGTATCGACCCGACCCAACTCCTCCAATCCTTGCTTTACCCCCAAACTCTTCATTCATCTCGTCAATTGGTTAATGAAAAGCGCTTCCCTCAAATGCTGCCGGATTCGGATGGCGACCTTTGCTTTTCTCTCAATGATTATACTGATGCCAGTTCCAATTTCTTCTATGTTGATTGCCCTGGCGTCGTTGCCTTGTCTAACCTGGATGAAATGTCCAAAGTCTTCACTCTTCCCCGTGTTTTGGCTGTTCATTGTGCTAATTTTGTTGGTAATGACGATCCAGAGATGAAGAGTACGTTGGAGGGGATACGAATACTTCCCTCTGACTTGTGGGTTCTTAGAAGTGAGGTAGAAATTTGGAATGACTACCCCAGTATGTATTCATTTGTTGTGCTTCGGTCCCTATTGGGGTCAGAGATGGCCATGGACAGCCATTTGATGACATGGATCATTGCAAATTCGCCTAGGTATGGTGTCGTTATTGATGTTGCTATGAGGGATCATATATTTTTGCTGTTTAGGCTGTGTTTTATGGCAATCTATAAGGAAGCTTTGGGATTTCAAATTGCGTTGGTAAATGGTAATGGAATAGAGGGTGGATCAGCGAATAGCTGTTTTAAGTGTCCAATTTTGATTCAAGTATTAATGTGGCTAGCATCACAGCTTTCCGTGTTGTATGGGGAAACGAGCGGGAAATTCTTTGCTATTAACATGCTTAGACAATGTATACTGGATGCCGCATTGCGGTTGTTGCTTTTACCATCGGAACCAAAGCCAGCAGAGAGTTTGACTTTAGCAGAGGGTTCTCATAATCTGGAAACTAGTTGTAGTGACACACAGAGTGTGAAGTTGAACGAATTGGATCAGAAAGTTGTAAATAATGGCAATGTTACTGGAAAAGAAACTGTCAATTGTAGGGTGATTCTCGTGTCCCAAGTGGCTGCAGCTGTTGCAGCATTGCATGAGCGGTTCCTACTTGAAGAAAAGATCAAAGCTTTACGATTTTCTCATCTGCAAACTAAATATCAGCGGGTTTCTGAGTATAACTATATCTCTCAAAGAGCTTGTGAAGAGCGTAAAAGACGTTGCAGCTATAGACCTATCATTGAGCATGATGGACTCCCAAAGCAGCAGTTTCACAATGAGGATACAAACAAGACCAAAACAAGGGAGGAGTTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAGCGATCAACATTACAGGTTACAAGAGATATTATTGAGGAATACATGGAGGAGATTATGAAAGCTGGAGGAATTGGGTGCTTTGTGAAGGGACCTGAAGAGGGAGGGATAAAATCTGAACAACCAACTGATCATAACATTACAAGAAATATTATTGCTGATGGGCACACAAAAGGAAGCAATGGCTCGTATGGAGATGCTAGACATAGCTCAAGTCATTCCAAGAAGCAGTCTAACTATGATAGTAGCTACTTGGGATCTCAGAAGCCACAGAAAGGTCATTATGGGCACTATGGCTGTCCAGAAGATGAAAGGAAAAGTTCCAGTAAGGACAAATATGATCGAGATCACTATCATAGGTTCTCAGATCAAAGCAGTAGTCCTAGCCAGTCACACAAATGGAAGAGATATCCAAGTGATCGAGATGATGAGGTGCGGGCAGAAACCAGGCATCATGAAACTAGAAAGCTGTCTTCTAGCAGCTCTAACTTTCATGGTTTTAGATCATCTTCATCCTCAAGGTCTGGGGGTGGTTCAAGTGCAAGGAAGGATGGGCATAAGTTGAGAGCCAGTGATAGTCGGAAAAGGAACATGGCAGATAATCACAGCTCAGAGCATTTGGTGTTCAATTCATTTAATGATAGGTATACCCCTTCCGAATGTCATGACCAATTGGAAGATGATTACTCCACTGTCAGTAAATTATCTAAATCCGGATGA 2271 43.59 MRAMNPSLPFPNQTFLNPNPNIPDSSHSQPQNPPLDLPSSLSSLENLIHVANQTLQSLSYLTLTPNPSHYAKNSDLVQCQFDRRHRVPPHSLFRHSLLCPSASLPRIDPTQLLQSLLYPQTLHSSRQLVNEKRFPQMLPDSDGDLCFSLNDYTDASSNFFYVDCPGVVALSNLDEMSKVFTLPRVLAVHCANFVGNDDPEMKSTLEGIRILPSDLWVLRSEVEIWNDYPSMYSFVVLRSLLGSEMAMDSHLMTWIIANSPRYGVVIDVAMRDHIFLLFRLCFMAIYKEALGFQIALVNGNGIEGGSANSCFKCPILIQVLMWLASQLSVLYGETSGKFFAINMLRQCILDAALRLLLLPSEPKPAESLTLAEGSHNLETSCSDTQSVKLNELDQKVVNNGNVTGKETVNCRVILVSQVAAAVAALHERFLLEEKIKALRFSHLQTKYQRVSEYNYISQRACEERKRRCSYRPIIEHDGLPKQQFHNEDTNKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQVTRDIIEEYMEEIMKAGGIGCFVKGPEEGGIKSEQPTDHNITRNIIADGHTKGSNGSYGDARHSSSHSKKQSNYDSSYLGSQKPQKGHYGHYGCPEDERKSSSKDKYDRDHYHRFSDQSSSPSQSHKWKRYPSDRDDEVRAETRHHETRKLSSSSSNFHGFRSSSSSRSGGGSSARKDGHKLRASDSRKRNMADNHSSEHLVFNSFNDRYTPSECHDQLEDDYSTVSKLSKSG 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21525938 21529458 - CcPI632755_03g011330.1 Cco03g1133 174492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1133 756 MobiDBLite consensus disorder prediction 651 675 - -
Cco03g1133 756 MobiDBLite consensus disorder prediction 570 585 - -
Cco03g1133 756 MobiDBLite consensus disorder prediction 570 756 - -
Cco03g1133 756 Pfam U11-48K-like CHHC zinc finger 76 99 IPR022776 -
Cco03g1133 756 PANTHER UNCHARACTERIZED 37 645 IPR051591 -
Cco03g1133 756 MobiDBLite consensus disorder prediction 697 719 - -
Cco03g1133 756 MobiDBLite consensus disorder prediction 7 40 - -
Cco03g1133 756 MobiDBLite consensus disorder prediction 676 696 - -
Cco03g1133 756 MobiDBLite consensus disorder prediction 613 639 - -
Cco03g1133 756 ProSiteProfiles Zinc finger CHHC U11-48K-type profile. 76 103 IPR022776 -
Cco03g1133 756 MobiDBLite consensus disorder prediction 720 735 - -
Cco03g1133 756 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1133 K13156 - - csv:101218930 1188.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0913 Cone1ag1670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01090 Cam03g1136 Cec03g1151 Cco03g1133 Clacu03g1113 Cmu03g1692 Cre03g1400 Lsi06g00751 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007212 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 3 1 37