Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1135 ATGTCCAAATTCCTGCTCTCTCACGCTTACCTTCTCACCCTTCCCCACAAACACCATTCCTTTTCTCTCAACCATGGCGTTCTTCCCATCCGCTCAGTCCTCTCTGCTCCAGAGAAGCGAGGTAGAAAGAAGCGGCAGTCGCGGCAGCAACAATTCCACCCAAAGGACGATGATTCCACTGCACTTGAGAAGGCCCTCCGCTTCACTTTCATGGAGGAACTCATGGACCGCGCTAGAAACCGCGACCCTCTCGGCGTTTCTGATGTCATTTACGATATGCTTGCCGCTGGATTGAACCCTGGACCTCGCTCCTTCCATGGATTAGTTGTTTCTCATGCTCTCAATGGTGATACTGAGGGAGCGATGCAATCTCTAAGAAGGGAATTAAGTGCTGGACTTCGTCCTCTTCATGAAACGTTTGTTGCATTAGTTCGGTTATTTGGTTCCAAGGGTCTTGCTACTAGAGGCTTAGAAATCCTTGCAGCCATGGAGAAATTGAATTATGACATCTGTCAAGCATGGCTCATTCTTACTGAGGAACTTGTAAGAAACAAATATTTAGAAGACGCCAACAAAGTGTTCTTAAAGGGTGCCAAAGGGGGTCTCAGAGCCACCGACAAGATTTATGATCTTCTGATTGAGGAAGATTGTAAAGCTGGGGATCATTCAAATGCCTTAGAGATCTCATATGAAATGGAGGCTGCTGGGCGGATGGCAACGACCTTTCATTTCAATTGCCTTCTTAGTGTCCAGGTGGTGTATCTTACTATTGGATAA 777 46.85 MSKFLLSHAYLLTLPHKHHSFSLNHGVLPIRSVLSAPEKRGRKKRQSRQQQFHPKDDDSTALEKALRFTFMEELMDRARNRDPLGVSDVIYDMLAAGLNPGPRSFHGLVVSHALNGDTEGAMQSLRRELSAGLRPLHETFVALVRLFGSKGLATRGLEILAAMEKLNYDICQAWLILTEELVRNKYLEDANKVFLKGAKGGLRATDKIYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQVVYLTIG 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21664820 21666222 + CcPI632755_03g011350.1 Cco03g1135 174494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1135 258 Gene3D Tetratricopeptide repeat domain 173 253 IPR011990 GO:0005515(InterPro)
Cco03g1135 258 Gene3D Tetratricopeptide repeat domain 39 172 IPR011990 GO:0005515(InterPro)
Cco03g1135 258 PANTHER OS03G0856100 PROTEIN 64 251 - -
Cco03g1135 258 MobiDBLite consensus disorder prediction 34 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1135 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01092 Cam03g1138 Cec03g1154 Cco03g1135 Clacu03g1115 Cmu03g1694 Cre03g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015717 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 10