Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1216 ATGGCTATGAAGTTTGCCATTTGTTGCAAGAAATCTGGGAAGTCCAGAATCATGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATGGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTGTTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATCATCCGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCGAGCCAAAAAATTGCTGCCTCACATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCATTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAGGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTAGTAGTCAAAATCAAACGTTGAGAAATTCCACTGGCAAAGCAACCATGGCGAAGTCAATCAACGATAAACCAAAGTCAATTTCCAGATCAGTGAGTTGTTGCAATGGTTGGCAAATATCTGAGGGAATAAGGTACCAAGGAGACGACTCGACTCGTCCAACCAACCCAACCCATGCTCAATAG 1455 42.82 MAMKFAICCKKSGKSRIMFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDMDADKLQHEFNSNFTPFVEESNALSEPEAVSVPSDSLQTYDALHSQQNDIEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKIAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPSSQNQTLRNSTGKATMAKSINDKPKSISRSVSCCNGWQISEGIRYQGDDSTRPTNPTHAQ 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23940354 23950878 + CcPI632755_03g012160.1 Cco03g1216 174575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1216 484 MobiDBLite consensus disorder prediction 372 400 - -
Cco03g1216 484 MobiDBLite consensus disorder prediction 312 371 - -
Cco03g1216 484 Gene3D - 129 171 - -
Cco03g1216 484 ProSiteProfiles IQ motif profile. 153 180 - -
Cco03g1216 484 ProSiteProfiles IQ motif profile. 129 157 - -
Cco03g1216 484 SMART iq_5 128 150 IPR000048 GO:0005515(InterPro)
Cco03g1216 484 SMART iq_5 151 172 IPR000048 GO:0005515(InterPro)
Cco03g1216 484 MobiDBLite consensus disorder prediction 418 454 - -
Cco03g1216 484 MobiDBLite consensus disorder prediction 310 454 - -
Cco03g1216 484 Pfam IQ calmodulin-binding motif 131 150 IPR000048 GO:0005515(InterPro)
Cco03g1216 484 PANTHER IQ-DOMAIN 5-RELATED 37 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1216 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1216 Cco-Chr3:23940354 Cco09g2240 Cco-Chr9:36699663 3.80E-33 dispersed
Cco03g1216 Cco-Chr3:23940354 Cco05g2036 Cco-Chr5:29436599 2.20E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2240 . 1 479 IQD Protein Family AT3G52290 52.9 4.8e-104 375.2
Cco05g2347 . 1768 1977 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cco03g1216 . 34 441 IQD Protein Family AT3G22190 57.2 1.0e-95 347.4
Cco05g2036 . 1 438 IQD Protein Family AT2G26180 61.6 2.7e-120 429.1
Cco04g2133 . 25 298 IQD Protein Family AT2G33990 52.9 1.2e-62 236.9
Cco07g1069 . 109 292 IQD Protein Family AT2G33990 52.9 1.5e-47 186.8
Cco04g2133 . 80 246 IQD Protein Family AT3G15050 61.7 2.5e-55 212.6
Cco07g1069 . 112 285 IQD Protein Family AT3G15050 61.0 3.0e-53 205.7
Cco01g0795 . 121 473 IQD Protein Family AT5G13460 50.7 3.3e-76 282.7
Cco06g0276 . 1 508 IQD Protein Family AT4G00820 51.5 9.7e-115 411.0
Cco03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 2.0e-64 243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42