Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1216 ATGGCTATGAAGTTTGCCATTTGTTGCAAGAAATCTGGGAAGTCCAGAATCATGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATGGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTGTTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATCATCCGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCGAGCCAAAAAATTGCTGCCTCACATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCATTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAGGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTAGTAGTCAAAATCAAACGTTGAGAAATTCCACTGGCAAAGCAACCATGGCGAAGTCAATCAACGATAAACCAAAGTCAATTTCCAGATCAGTGAGTTGTTGCAATGGTTGGCAAATATCTGAGGGAATAAGGTACCAAGGAGACGACTCGACTCGTCCAACCAACCCAACCCATGCTCAATAG 1455 42.82 MAMKFAICCKKSGKSRIMFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDMDADKLQHEFNSNFTPFVEESNALSEPEAVSVPSDSLQTYDALHSQQNDIEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKIAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPSSQNQTLRNSTGKATMAKSINDKPKSISRSVSCCNGWQISEGIRYQGDDSTRPTNPTHAQ 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23940354 23950878 + CcPI632755_03g012160.1 Cco03g1216 174575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1216 484 MobiDBLite consensus disorder prediction 372 400 - -
Cco03g1216 484 MobiDBLite consensus disorder prediction 312 371 - -
Cco03g1216 484 Gene3D - 129 171 - -
Cco03g1216 484 ProSiteProfiles IQ motif profile. 153 180 - -
Cco03g1216 484 ProSiteProfiles IQ motif profile. 129 157 - -
Cco03g1216 484 SMART iq_5 128 150 IPR000048 GO:0005515(InterPro)
Cco03g1216 484 SMART iq_5 151 172 IPR000048 GO:0005515(InterPro)
Cco03g1216 484 MobiDBLite consensus disorder prediction 418 454 - -
Cco03g1216 484 MobiDBLite consensus disorder prediction 310 454 - -
Cco03g1216 484 Pfam IQ calmodulin-binding motif 131 150 IPR000048 GO:0005515(InterPro)
Cco03g1216 484 PANTHER IQ-DOMAIN 5-RELATED 37 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1216 Cco-Chr3:23940354 Cco09g2240 Cco-Chr9:36699663 3.80E-33 dispersed
Cco03g1216 Cco-Chr3:23940354 Cco05g2036 Cco-Chr5:29436599 2.20E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1216 - - - 0.0