Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1228 ATGGCTACTCAGGCACTTGTCTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGACAAAACCGTCTTTTGGATCTTCCAGAAAATCAGCTTCTTTTGTTGTTAGAGCTCAAGCCACTCCTCCTGTTAAGCAAGGAGCAGATAGACAACTATGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCGGGTGATTATGGATTCGACCCATTGGGGCTATCAGACCCCGAAGGAACAGGAGGGTTTATCGAGCCAAGATGGTTGGCATACGGTGAGGTGATCAACGGGAGGTTCGCGATGTTGGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCCCTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGAACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTAGAAATGGCTCTGATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTGTTGACCAGCCTTAAATTCCACTAG 822 47.69 MATQALVSSSLTSSVGAARQRLGTKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24224894 24226637 - CcPI632755_03g012280.1 Cco03g1228 174587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1228 273 Pfam Chlorophyll A-B binding protein 64 243 IPR022796 -
Cco03g1228 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 17 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cco03g1228 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Cco03g1228 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Cco03g1228 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1228 Cco-Chr3:24224894 Cco08g1778 Cco-Chr8:28895704 1.20E-44 dispersed
Cco03g1228 Cco-Chr3:24224894 Cco06g1814 Cco-Chr6:28499730 4.00E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1228 K08909 - csv:101202993 528.094