Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1316 ATGACAGGAGTTGCAAATTGCAACCATAGACAATCCTTCAAACGCTGTGGAATGTGCAATGGTGAATTACTCAATCAACCAAAAATTCTCCAAAAGGCTGTTGAAGAATTGGACCAAGTAGTTGGAAGAAATAGGTTGGTTCAAAAATTGGATATACCAAATCTCAAGTATCTCATAGCTTGTACTAGAGAATCTTTTCGACTTCATCCATTTTCGCCATTCAATGTTCCTTATGTTTCCAACTGTGACATTGTTGTGGCTGGCTACTTCGTCCCCAAAGGTAGCCAAGTTTTGTTATCTCATCTAGGCCTTGGTCGAAACCCAAGGATTTGGGAGGATCTGATGAGATTTGATCCAGAATGTCATCTGAAAAATGGTACAATTGAATTGAGAATTTCAGAACCCAGCCTACGATTCATCACCTTCATTAGAGGGAGGAGAGGATGCATTGGTACCTCACTTGGCACTAAAATTACCTGA 480 40.21 MTGVANCNHRQSFKRCGMCNGELLNQPKILQKAVEELDQVVGRNRLVQKLDIPNLKYLIACTRESFRLHPFSPFNVPYVSNCDIVVAGYFVPKGSQVLLSHLGLGRNPRIWEDLMRFDPECHLKNGTIELRISEPSLRFITFIRGRRGCIGTSLGTKIT 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26426009 26426488 + CcPI632755_03g013160.1 Cco03g1316 174675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1316 159 PRINTS P450 superfamily signature 25 38 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS P450 superfamily signature 140 149 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS P450 superfamily signature 149 159 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS P450 superfamily signature 60 71 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 SUPERFAMILY Cytochrome P450 22 155 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS E-class P450 group I signature 16 42 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS E-class P450 group I signature 139 149 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS E-class P450 group I signature 100 124 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS E-class P450 group I signature 59 77 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PRINTS E-class P450 group I signature 149 159 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 22 159 IPR051382 -
Cco03g1316 159 Pfam Cytochrome P450 22 155 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1316 159 Gene3D Cytochrome P450 18 157 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1316 Cco-Chr3:26426009 Cco03g1323 Cco-Chr3:26590401 1.40E-64 dispersed
Cco03g1316 Cco-Chr3:26426009 Cco03g1317 Cco-Chr3:26452685 4.10E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1316 - - - 0.0