Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1318 ATGAAAGTTGTTTTCTTATTCATCAGTCAATTGGCATACCAAAATTCCCCAATAGCCATACCCAAAACATTCATTGTCTTGGTATTTATGGCTTTTACTTCTATCATGTTATCCCAATGTTATAACCTCAAAAGAAAACACTTAAGCCGACAACAAGCACCTCTTCCACCAGGCCCAAAGGCATGGCCTATTGTTGGGTGCCTCCCATCAATGTTGTTGAGGAACAACTCCTCATCCCACCAATGGATTCATTCAGTAATGAAACAATTCAACACTGAAATTGCTTCCATACGCCTTGGGAATACTAACATAATCCCCATCACTTCTCCAGAACTCGCTCTTCAATTTTTCAAGACACATGATTCTGTCTTTGCATCACGTTCCTTTATTTCTAACGCTGTTGATATCTTAACCCGTGGATATATCTCCACGATATTCTCACCATTGGGAGACCAATGGAAAAAGATGAGAAGAATTCTCTCATCAGAAGTACTCAATCCATCAACTCTCCACCGAATGCTTGGCCAAAGAACCGCTGAAGCTGATACTCTTTTACACTATATTTTCACCCAAACCAGTAGTAATGGAGGAGGTGCGGTGATTAACGTTAGAAGCATAGCACAACATTATTGCGGTAACATTATTCGAAGAATGCTATTCAATAGAAGATATTATGGCAAAGGGAAGGAAGATGGGGGGCCAACTTTTGAAGAAGAAGAACATAATCAAGCATTGTTGACCATTCTCAGACATAATGTTTTGAATGTCCTTCGAAAGTATGACGACCCCATTATAGATGAGAGAGTGCAACAATGGAAGAAAGGTGACAAAATAGATGGGGTAAAGGACATTCTTGATATCCTCATTTCACTTAAAGATGAGAATGCAACTTCATTGTTGTCAATTGAAGAGATCAAGGCTCAAATCACAGACTTACAAATTGCAACGATAGATAATCCTTCAAATGCAGTGGAATGGGCAATAGCAGAATTACTCAACCAACCAAAAATTCTCAAAAAAGCTGTTGAAGAATTGGATGAAGTAGTTGGAAGAGAAAGGTTGGTTCAAGAATCTGATATCCCAAAACTCAAGTATCTCACAGCTTGTGCTAGAGAATCTTTTCGACTTCATCTATTTTCACTCTTCAACGTTCCTCACGTTTCCACCTCTGACATCGTTGTGGCTGGATACTTTATTTCCAAAGGAAGTGAAGTGTTGCTCAGTCGTTTAGGTCTTGGTCGAAATCCAAGGATTTGGGAGAATCCAATGAGATTTGATCCAGAACGTCATTTAAAAGATGGGACAATTGAATTGGGGATTTCAAAACCCAATTTACGATTCATCACTTTCACTAGAGGGAAGAGAGGCTGTGCTGGTAGCTCACTGGGAACTAACATTACCATGATGTTATTTGCTAGACTTTTACAAGGGTTTTCCTGGAGTTTAATACCAAGAATTACGAAGATAGACCTTTCTGATACTGATGATCTTTCTCTCTCAAAGCCGTTACATTTACTTGCAGAACCACGTTTATCTTATAGTATGTACCCAAGGCTTTCTTGA 1563 39.09 MKVVFLFISQLAYQNSPIAIPKTFIVLVFMAFTSIMLSQCYNLKRKHLSRQQAPLPPGPKAWPIVGCLPSMLLRNNSSSHQWIHSVMKQFNTEIASIRLGNTNIIPITSPELALQFFKTHDSVFASRSFISNAVDILTRGYISTIFSPLGDQWKKMRRILSSEVLNPSTLHRMLGQRTAEADTLLHYIFTQTSSNGGGAVINVRSIAQHYCGNIIRRMLFNRRYYGKGKEDGGPTFEEEEHNQALLTILRHNVLNVLRKYDDPIIDERVQQWKKGDKIDGVKDILDILISLKDENATSLLSIEEIKAQITDLQIATIDNPSNAVEWAIAELLNQPKILKKAVEELDEVVGRERLVQESDIPKLKYLTACARESFRLHLFSLFNVPHVSTSDIVVAGYFISKGSEVLLSRLGLGRNPRIWENPMRFDPERHLKDGTIELGISKPNLRFITFTRGKRGCAGSSLGTNITMMLFARLLQGFSWSLIPRITKIDLSDTDDLSLSKPLHLLAEPRLSYSMYPRLS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26471977 26474035 + CcPI632755_03g013180.1 Cco03g1318 174677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1318 520 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 Pfam Cytochrome P450 56 500 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 SUPERFAMILY Cytochrome P450 56 510 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco03g1318 520 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 29 514 IPR051382 -
Cco03g1318 520 Gene3D Cytochrome P450 48 513 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1318 Cco-Chr3:26471977 Cco03g1321 Cco-Chr3:26528300 2.30E-225 dispersed
Cco03g1317 Cco-Chr3:26452685 Cco03g1318 Cco-Chr3:26471977 1.80E-158 tandem
Cco03g1318 Cco-Chr3:26471977 Cco03g1319 Cco-Chr3:26504044 2.20E-241 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1318 - - - 0.0