Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1331 ATGTTTCAAGACGAAGGCACATCCTCCATCACTTCCTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCCCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTTAAATCTGAGGAGAGGGGCTTGTATCTAATCCATTTGTTGCTTACTTGTGCAAATCATGTGGCTGTTGGTAGCCTTGACAGTGCTAATCTTGCCCTTGATCAAATATCTCATCTTGCTTCTGCAGATGGTGATACAATGCAGCGAATTGCAGCATATTTCGCCGAGGCTCTCGCGGATAGGATCCTCAAGACTTGGCCTGGTCTTTACAAGGCATTCAACTCTACTAAGATACCAATGGTTTCAGAGAAGATTCTTGTTAAGAAACTGTTCTTTGAAATGTTTCCATTCCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGAGAAAAGATGATTCATATAATTGATCTCAATGCTAATGAAACTGCTCAGTGGCTTGCTCTTTTGCAAGTTTTGAGTGTGAGGCCTGAAGGACCTCCACATTTAAGAATCACTGGAGTTCATCCACAGAAAGAGGTTCTGGATCAAATGGCTCGTAGGCTGACCGATGAAGCTGAGAAATTGGACATCCCGTTCCAATTCAATTCGGTTATCAGCCGACTAGACGATCTTGATATGGAAAAGCTTCGTGTGAAAACTGGGGAGGCTTTGGCCATCAATTCGGTTCTTCAGTTGCACACCCTTTTGGGCTGTGATAATGAAGTCTTGCAAAAGCCATCTCCATCAGCAGCCAAGAGTGCAAATGGAGTTCAATACTCGAGATACCCACATCTGAACCAAACCACCTTGAGTGACTTACTCGACAAGGATTTGGTTAACGGATGTAGTCCAAGTCCCGATTCAGTTTCCTCATCAGTATTATCTCAGGCTAATGCGACAAAGATCGACAGCTTTTTGAATGGATTGTGGAGTTTGACGCCAAAGGTGATGGTCGTAACAGAACAAGATTCTAACCATAATGGTTCAACACTTATGGAGAGATTACTGGAGGCTCTCCACACATATGCAGCTATCTTTGATTGTTTGGAGTCTAACATGTCAAGAACATCCCTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGAGAAGAGATTAAGAACATCATAGCTTGTGAGGGAGCTGAAAGGAAGGAACGACATGAAAAACGAGAGAAATGGAGTCAACGGTTTGATGTTGCGGGGTTCAGGCATGTATCTTTGAGTTATTATGGCATGATGCAGGCTCGGAGCTTGCTGCAGGGGTACGGTTGTGATGGTTATAGGATGAAGGAAGAGAATGGCTGTGTGATGATTTGTTGGCAAGATCGTCCATTGTTCTCAGTTTCGGCTTGGAGATGTTGCAAGTAG 1416 43.79 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDSANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEKILVKKLFFEMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHPQKEVLDQMARRLTDEAEKLDIPFQFNSVISRLDDLDMEKLRVKTGEALAINSVLQLHTLLGCDNEVLQKPSPSAAKSANGVQYSRYPHLNQTTLSDLLDKDLVNGCSPSPDSVSSSVLSQANATKIDSFLNGLWSLTPKVMVVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKREKWSQRFDVAGFRHVSLSYYGMMQARSLLQGYGCDGYRMKEENGCVMICWQDRPLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26718632 26720047 + CcPI632755_03g013310.1 Cco03g1331 174690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1331 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 467 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009739(PANTHER)|GO:0043565(PANTHER)
Cco03g1331 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
Cco03g1331 471 Pfam GRAS domain family 46 468 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1331 Cco-Chr3:26718632 Cco05g2342 Cco-Chr5:31932949 9.70E-151 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58955 PF03514 GRAS 9.70E-142 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1331 - - - 0.0