Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1365 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACAAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGATGCAGTCCACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGGCGTTTTGCGAAGAAAAATGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTATGGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACGAACAAGACCTCAGAATAG 810 45.31 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSAGSYRQDAQKMQHVSSTLPAMHGECGMQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYGLNDGSEQQNGSSLTNKTSE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27237883 27240133 - CcPI632755_03g013650.1 Cco03g1365 174724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1365 269 MobiDBLite consensus disorder prediction 248 269 - -
Cco03g1365 269 MobiDBLite consensus disorder prediction 37 101 - -
Cco03g1365 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 259 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco03g1365 269 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cco03g1365 269 MobiDBLite consensus disorder prediction 82 101 - -
Cco03g1365 269 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1365 269 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1365 269 MobiDBLite consensus disorder prediction 203 269 - -
Cco03g1365 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1365 269 MobiDBLite consensus disorder prediction 206 225 - -
Cco03g1365 269 MobiDBLite consensus disorder prediction 1 17 - -
Cco03g1365 269 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1365 269 MobiDBLite consensus disorder prediction 1 22 - -
Cco03g1365 269 Gene3D - 171 233 - -
Cco03g1365 269 MobiDBLite consensus disorder prediction 226 244 - -
Cco03g1365 269 SMART cbf3 170 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1365 269 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1365 Cco-Chr3:27237883 Cco09g0394 Cco-Chr9:3582610 6.30E-38 dispersed
Cco02g2469 Cco-Chr2:37050865 Cco03g1365 Cco-Chr3:27237883 8.10E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58957 PF02045 CBFB_NFYA 1.70E-25 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1365 K08064 - csv:101212860 495.738